3300023082: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L073-202C-2

Overview

Basic Information

• IMG/M Taxon OID: 3300023082
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290900 | Ga0247730
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L073-202C-2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 436103727
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034190	Metagenome / Metatranscriptome	175	Y
F041209	Metagenome / Metatranscriptome	160	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247730_1068066	Not Available	993
Ga0247730_1085142	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	873
Ga0247730_1204108	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247730_1068066	Ga0247730_10680661	F034190	IDTRSALLNGDWCFLNAVLGLMAPSATHPCPICIVSKSNLLSTSRYRTPADKHSIDRTHQPLLTIPPERIVPTPLHLFLGISNRIILDAFSELLGKERVEAALKSITTIHSAGCSGAADLHDLNGPEISKWIKKECSATLLSAAAAASAVTDAIAASHSTLTRWLQQLHHCLLRSGDWSAADIDAWRSVVSDIHQHWCAETSQKAFPKLHMLHHSIDFAERHRFLGRASEAQIESCHAFFNSLVHKQHRNQSGNTAERLRRCLADASLRAVQPLLQP
Ga0247730_1085142	Ga0247730_10851421	F041209	MRRKLQRIDKRRVLFLDETALRLSAAPTHTIVLPGEQPYVLATETSAYSKRYDMIAVCTGDRVLVPTIFTPKERKDADVRGINRSMLLQFIDDVLAQAVEGLDRYPLTLVLDKATIHLDTDAIRQAFHDRGSQSIKDILIMPPNAAKRMSPLDNALFHDWKEECRSQCPMTARTIQRIMNDAW
Ga0247730_1204108	Ga0247730_12041081	F034190	LLGEKVVLEAVVGIKTIHSAGCGGVSDLHELNGPEISKFIKRERSTSALAAADASTPLTDSVKASHSILSRWLHQLHHSLLHSGDWTAADIDAWRMAVDDIQRHWQAEACSKPFPKLHMLRHSVDFAERYRFLGRASEAQIESCHATLNALFHRQHRNQSGNVSERLRRSL