3300023052: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-205

Overview

Basic Information

• IMG/M Taxon OID: 3300023052
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272134 | Ga0233331
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-205
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 135282213
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	1
Not Available	15
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2526
  • Long. (^o): -123.026
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F050386	Metagenome / Metatranscriptome	145	Y
F091248	Metagenome	107	N
F106076	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233331_1000146	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes	4700
Ga0233331_1001066	Not Available	2095
Ga0233331_1001879	Not Available	1729
Ga0233331_1002879	Not Available	1499
Ga0233331_1012330	Not Available	902
Ga0233331_1013473	Not Available	872
Ga0233331_1016194	Not Available	808
Ga0233331_1016280	Not Available	807
Ga0233331_1016564	Not Available	801
Ga0233331_1022528	Not Available	706
Ga0233331_1024766	Not Available	678
Ga0233331_1028163	Not Available	642
Ga0233331_1028902	Not Available	635
Ga0233331_1033479	Not Available	596
Ga0233331_1035995	Not Available	577
Ga0233331_1043649	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes → Helotiales → Rutstroemiaceae → Rutstroemia → unclassified Rutstroemia → Rutstroemia sp. NJR-2017a WRK4	530
Ga0233331_1048556	Not Available	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233331_1000146	Ga0233331_10001461	F050386	MAFRLRGPRKSYQWKRISELHKLMIDIQTAHAKLGSQDGNSREHEIKVPNDY
Ga0233331_1001066	Ga0233331_10010661	F091248	MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMTVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKLEWVPIMFFIATEGTIFNWASIVSSNLSSCVAAASEGKE
Ga0233331_1001879	Ga0233331_10018794	F015054	MIGMEVEDHLDGATNFISCKSRVLIVEENDLLKIVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVAQISQKKTTRKILKP
Ga0233331_1002879	Ga0233331_10028792	F015054	IGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233331_1012330	Ga0233331_10123301	F015054	MIGMKVEKNLYGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTR
Ga0233331_1013473	Ga0233331_10134731	F091248	MSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGVDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVAGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNIRMDLIETMKRMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQKKSEFYMSSILIDCIICHQPFPGLKCVWDRDRVPVYVAF
Ga0233331_1016194	Ga0233331_10161941	F015054	MIGMKVEDHLDGATNFISWKFRVLILGENDPLKLVNEKVQEQNVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMK
Ga0233331_1016280	Ga0233331_10162801	F091248	MSRRQKKKAPAVEEASVPEAETKTEYIYEDTQCVTGVEPEYKWGEIYRLISHREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSEVMKWILPHTNHDTMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLVETMRRMLLPGKIYRHRATEDYDTASLRAPYRFIALMLNKIFGRANGRLFKFEWIPLI
Ga0233331_1016564	Ga0233331_10165641	F015054	SWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKILKE
Ga0233331_1022528	Ga0233331_10225281	F015054	MIGMNVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTTKILKP
Ga0233331_1024766	Ga0233331_10247661	F015054	SVGKMIGMKVEDHLDGATNFISWKFRVLILGENDPLKLVNERVQEQNVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233331_1028163	Ga0233331_10281632	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVAEPNVEEDKSRWRKSNARARRILVDSVRNHLVPQISQKKTTRKMFKAVNE
Ga0233331_1028902	Ga0233331_10289021	F091248	SHREVPDMGLEEEPIYANIERSAIMKVATRPEMFPCSEVMKWILPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRDNGRLFKFEWIPLIFHVATEGTIFNWSILVSSSLSSCIAAAKGGVEQKKSKFYMSSILIDCILCHQPFPKLK
Ga0233331_1033479	Ga0233331_10334791	F011735	MWHGPYMVKHVLEKGAYDLVDYEGTALVEPRNGLYLKKYYA
Ga0233331_1035995	Ga0233331_10359951	F015054	MIGMKVEDHLDGATNFIFWKSRVLILDENDLSKLVNEKFPEAGADEDKSHWKKSYARARRILVDSVRDHLVPQILRKKTTKKMFKTLK
Ga0233331_1043649	Ga0233331_10436491	F106076	PWKPVNIKANNTVAVNPYKVPLLFPCIIEXXEYVTVTPEDNNITVLSKGNSKGFIGSIPIGGHXAPNSTVGDNALXKKAQKTPKKNNASDSINKATPIFSPLCTANVXFPKYVPSLITSRHQYDIDNITERKANTITGLAPLKLXKVDTALVVNVNNAIHVYIGQGEGDTKXKGXA
Ga0233331_1048556	Ga0233331_10485561	F015054	YAGKMIGMKIEDHLDGAINFISWNSRVLILEENVLLKFVNEKVRKQDAKEDKSHWRKSDARARRIFVDSVRDHLVPQISQKKKTRKMLKTLNE