3300023050: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-319

Overview

Basic Information

• IMG/M Taxon OID: 3300023050
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272156 | Ga0233353
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-319
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 117736192
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2526
  • Long. (^o): -123.026
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F091248	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233353_1005113	Not Available	1294
Ga0233353_1006642	Not Available	1160
Ga0233353_1007554	Not Available	1103
Ga0233353_1017411	Not Available	788
Ga0233353_1018149	Not Available	776
Ga0233353_1018471	Not Available	771
Ga0233353_1018892	Not Available	764
Ga0233353_1019708	Not Available	751
Ga0233353_1022940	Not Available	707
Ga0233353_1024389	Not Available	690
Ga0233353_1030296	Not Available	632
Ga0233353_1041840	Not Available	550

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233353_1005113	Ga0233353_10051131	F015054	KMIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233353_1006642	Ga0233353_10066421	F015054	QTLSLGSLILGENDLLKLVNEKVLEEDVEENKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233353_1007554	Ga0233353_10075541	F091248	MIHLRKDILLHNVHKFKLLKCHNVFTLQEEFTMSKRQKRKAPAVEEQTAIEVVPQKEYIYEDTQCISGIEPEYEWGEIYRLISRREVPDTGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLMGNVEGQGYAAFSPGYVALAYHLPETQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANG
Ga0233353_1017411	Ga0233353_10174111	F015054	MIGMKVEDHLDGATNFISRKFRVLILGENDPLKLVNEKVQKQNVEEDKSHWRKSDARARRILVNSVMDHLVTQILQTKTTMKMFKTLKE
Ga0233353_1018149	Ga0233353_10181491	F091248	MSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGLDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVAGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNIRMDLIETMKRMLLPGKLFRHRVTEDYDTATLRPLYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLASCIAVEKGG
Ga0233353_1018471	Ga0233353_10184711	F015054	GKMIGTKVEDHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDGRARRILVDSVRDRLVPQISQKKMTKKMFRTLKE
Ga0233353_1018892	Ga0233353_10188921	F015054	MIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKSHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFKTLK
Ga0233353_1019708	Ga0233353_10197081	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVSQISQKKTTRKMFKTLKE
Ga0233353_1022940	Ga0233353_10229401	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLANEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVPQMSQKKTTMKMFKTLKE
Ga0233353_1024389	Ga0233353_10243891	F091248	VPAAEVETRIEYIYEDTQCVTGVEPEYKWGDVYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRENGRLFKLEWVPIMFFIATEGTIFNWASIVSSNLSSCVAAASEGKERRRSEFYM
Ga0233353_1030296	Ga0233353_10302962	F011735	MWHGPYVVKHVLEKGAYELVDYEGTALAEPRNGLYLKKYYA
Ga0233353_1041840	Ga0233353_10418401	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLNLVNEKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKTLNE