Sample 3300023045

Overview

Basic Information
IMG/M Taxon OID	3300023045 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0132900 \| Gp0272147 \| Ga0233344
Sample Name	Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-281
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	117803868
Sequencing Scaffolds	13
Novel Protein Genes	13
Associated Families	3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	1
Not Available	12

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	40.2198	Long. (^o)	-122.9842	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F015054	Metagenome	257	Y
F050386	Metagenome / Metatranscriptome	145	Y
F091248	Metagenome	107	N

Family

Category

Number of Sequences

3D Structure?

F015054

Metagenome

257

F050386

Metagenome / Metatranscriptome

145

F091248

Metagenome

107

Scaffold	Taxonomy	Length	IMG/M Link
Ga0233344_1000962	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus	3063	Open in IMG/M
Ga0233344_1001556	Not Available	2384	Open in IMG/M
Ga0233344_1006306	Not Available	1226	Open in IMG/M
Ga0233344_1006361	Not Available	1221	Open in IMG/M
Ga0233344_1008616	Not Available	1048	Open in IMG/M
Ga0233344_1016206	Not Available	761	Open in IMG/M
Ga0233344_1017411	Not Available	733	Open in IMG/M
Ga0233344_1018516	Not Available	709	Open in IMG/M
Ga0233344_1020047	Not Available	680	Open in IMG/M
Ga0233344_1023323	Not Available	629	Open in IMG/M
Ga0233344_1028639	Not Available	565	Open in IMG/M
Ga0233344_1030258	Not Available	550	Open in IMG/M
Ga0233344_1032235	Not Available	533	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0233344_1000962

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetidae → Agaricales → Tricholomatineae → Lyophyllaceae → Hypsizygus → Hypsizygus marmoreus

3063

Open in IMG/M

Ga0233344_1001556

Not Available

2384

Open in IMG/M

Ga0233344_1006306

Not Available

1226

Open in IMG/M

Ga0233344_1006361

Not Available

1221

Open in IMG/M

Ga0233344_1008616

Not Available

1048

Open in IMG/M

Ga0233344_1016206

Not Available

761

Open in IMG/M

Ga0233344_1017411

Not Available

733

Open in IMG/M

Ga0233344_1018516

Not Available

709

Open in IMG/M

Ga0233344_1020047

Not Available

680

Open in IMG/M

Ga0233344_1023323

Not Available

629

Open in IMG/M

Ga0233344_1028639

Not Available

565

Open in IMG/M

Ga0233344_1030258

Not Available

550

Open in IMG/M

Ga0233344_1032235

Not Available

533

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0233344_1000962	Ga0233344_10009622	F050386	MTEGMKKIEAFRLWGPRKSYQWKRNSEVHKLMVDIQTAHDKLGSQDGNSREHEIKVPNDY
Ga0233344_1001556	Ga0233344_10015561	F015054	GGKMIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233344_1006306	Ga0233344_10063061	F015054	ILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKILKE
Ga0233344_1006361	Ga0233344_10063612	F015054	MIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKFHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFKTL
Ga0233344_1008616	Ga0233344_10086161	F015054	MIGMKVEDHLDAATNFISCKSKVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKT
Ga0233344_1016206	Ga0233344_10162061	F091248	EEQPEIEVVTKTEYIYEDTQCISGVEPEYKWGDIYRLISRREVPDMGLEEEPIYANIERSAIMKVATRPELFPCSEVIRWILPHTNTATMLIGNVEGQDYAAFSPGYVALAYHLLEPQIFLSDAWLDNIRMDLIETLKRMLLPGKLYRHRATGEYDTASLRAPYRFIALMLNRIFGRAHGRLFKFEWIPIMFHVATQGTVFNWASLVSSSLSSCVAAALGGESKKKSEFYMSSILVDCILCNQPFPGLKCV
Ga0233344_1017411	Ga0233344_10174111	F015054	MIGMKVEDNRDGATNFIFLKSILLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTTRKMFKTIK
Ga0233344_1018516	Ga0233344_10185161	F015054	ISWKSRVLILKENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVNDHLVPQISQKKTTRMILKP
Ga0233344_1020047	Ga0233344_10200471	F015054	MKVEDHHDGATNFISWKSRVFILEENDLLKVVNEKVLESDAEEDKSHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMLKTLMEXXLLMAKPDLYGR
Ga0233344_1023323	Ga0233344_10233232	F015054	LDGATNFIFWKSIVLILEKNGFLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKALKE
Ga0233344_1028639	Ga0233344_10286391	F091248	RWVLPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLTNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWVPLIFYVATEGTIFNWSSLVSSSLSSCIAAAKGGVEQKKSEFYMSSILIDCILCRQPFPELKCVWDRDRMPVYAAYKLL
Ga0233344_1030258	Ga0233344_10302582	F015054	MIGMNVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPELNVEEDKFHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKT
Ga0233344_1032235	Ga0233344_10322352	F015054	MILMKIEDHLDGATNFISWKSRVLILGENDLLKLVNEKVPEEDVEEDKSHWRKSDARARRILVNSLRDHLVTQILQMKTTMKMFKTLNE

Scaffold ID

Protein ID

Family

Sequence

Ga0233344_1000962

Ga0233344_10009622

F050386

MTEGMKKIEAFRLWGPRKSYQWKRNSEVHKLMVDIQTAHDKLGSQDGNSREHEIKVPNDY

Ga0233344_1001556

Ga0233344_10015561

F015054

GGKMIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE

Ga0233344_1006306

Ga0233344_10063061

F015054

ILEENDLLKLVNEKVPEPEAEEDKSHRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKILKE

Ga0233344_1006361

Ga0233344_10063612

F015054

MIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKFHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFKTL

Ga0233344_1008616

Ga0233344_10086161

F015054

MIGMKVEDHLDAATNFISCKSKVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKT

Ga0233344_1016206

Ga0233344_10162061

F091248

EEQPEIEVVTKTEYIYEDTQCISGVEPEYKWGDIYRLISRREVPDMGLEEEPIYANIERSAIMKVATRPELFPCSEVIRWILPHTNTATMLIGNVEGQDYAAFSPGYVALAYHLLEPQIFLSDAWLDNIRMDLIETLKRMLLPGKLYRHRATGEYDTASLRAPYRFIALMLNRIFGRAHGRLFKFEWIPIMFHVATQGTVFNWASLVSSSLSSCVAAALGGESKKKSEFYMSSILVDCILCNQPFPGLKCV

Ga0233344_1017411

Ga0233344_10174111

F015054

MIGMKVEDNRDGATNFIFLKSILLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTTRKMFKTIK

Ga0233344_1018516

Ga0233344_10185161

F015054

ISWKSRVLILKENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVNDHLVPQISQKKTTRMILKP

Ga0233344_1020047

Ga0233344_10200471

F015054

MKVEDHHDGATNFISWKSRVFILEENDLLKVVNEKVLESDAEEDKSHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMLKTLMEXXLLMAKPDLYGR

Ga0233344_1023323

Ga0233344_10233232

F015054

LDGATNFIFWKSIVLILEKNGFLKLVNEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKALKE

Ga0233344_1028639

Ga0233344_10286391

F091248

RWVLPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLTNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWVPLIFYVATEGTIFNWSSLVSSSLSSCIAAAKGGVEQKKSEFYMSSILIDCILCRQPFPELKCVWDRDRMPVYAAYKLL

Ga0233344_1030258

Ga0233344_10302582

F015054

MIGMNVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPELNVEEDKFHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKT

Ga0233344_1032235

Ga0233344_10322352

F015054

MILMKIEDHLDGATNFISWKSRVLILGENDLLKLVNEKVPEEDVEEDKSHWRKSDARARRILVNSLRDHLVTQILQMKTTMKMFKTLNE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023045: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-281

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences