3300023041: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D1

Overview

Basic Information

• IMG/M Taxon OID: 3300023041
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272171 | Ga0233368
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung D1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 77518334
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041054	Metagenome / Metatranscriptome	160	Y
F041521	Metagenome	159	Y
F043727	Metagenome	155	Y
F052303	Metagenome	142	Y
F059515	Metagenome	133	Y
F072921	Metagenome / Metatranscriptome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233368_1003971	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1543
Ga0233368_1004284	All Organisms → cellular organisms → Bacteria	1486
Ga0233368_1008065	Not Available	1084
Ga0233368_1008311	Not Available	1068
Ga0233368_1012651	Not Available	872
Ga0233368_1020912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	686
Ga0233368_1027924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	596

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233368_1003971	Ga0233368_10039712	F041054	MGVRNCEEIGINLQKIMTRLFTNQNLLKLLYYTDKDPYSQPDLTQEQIKKEIYEKLIKIVPRVGPKETAHSVLVIKVGRGSTDSSNTEFKNININIESFVPLTQWIIKDDNLRPFAIMGEVQKSLNGKTINGLGKMTGGDFALNFLTEEISAYEQEFHLITYD
Ga0233368_1004284	Ga0233368_10042842	F072921	MKSRLSLSTDRKSAAESEYIEIRWACDACPDSLFLSIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSSMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0233368_1008065	Ga0233368_10080653	F043727	MMTNKECIDRWAEQIIPAVFRAEDALQKAVPEWKERLAAINAGTSTEDPHKVALEYCRAIAHIIVTQAADYVPDGTIDGEADFT
Ga0233368_1008311	Ga0233368_10083112	F072921	MQMKKILSLTTDRKSASEGEFIEIRWNCDACPDSLLLTIDSGYKCDTIAVADSGSTRIMMSRSKGKTVVSLKAVISGKKVTESVDIRIKNSKNTTSGTTPGISKTKIWKEKIVAKWYVFRAQMKYWWLSQKKWQKALWITLLALWLGMMIASFANDPKPEISSGQIQTAACRPSFDNQHTQAYFPEVVRVTRAAP
Ga0233368_1012651	Ga0233368_10126512	F041521	NCAAYGTIKTNYAKNSFNNTPTIYMGGFLSFSNTGAKTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVNAIKNCYYLADDGLEAVHSDSDLKPNSDNVEIIAVTEEELKDGTIATQLGGSWTQGENYPVIKK
Ga0233368_1020912	Ga0233368_10209122	F052303	MKVIWIILAVLSFIGGQAYLVYLLRKLDKFLERRPSNEPTFTYDDSCRYPEDVVE
Ga0233368_1027924	Ga0233368_10279242	F059515	QKIANTDVVNDIYKMYDYVNFLCAWNTYFVNSYTDENGVTQPGYYLYASDAENFIYKDGAQYNYGYKEGYFDSIVAEIEAVDKTAFADLVANVRKAEALANKALGELKNKNYTSEYKYVEKFGKEDWIFTLNKGEELAAEMQEIYMEFSNWLGSWEM