Sample 3300023037

Basic Information
IMG/M Taxon OID	3300023037 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0132900 \| Gp0272137 \| Ga0233334
Sample Name	Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-217
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300023037 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0132900 | Gp0272137 | Ga0233334

Sample Name

Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-217

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	88168703
Sequencing Scaffolds	23
Novel Protein Genes	24
Associated Families	3

Dataset Contents

Total Genome Size

88168703

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	22
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa

Ecosystem Assignment (GOLD)
Name	Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
Type	Environmental
Taxonomy	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Ecosystem Assignment (GOLD)

Name

Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Type

Environmental

Taxonomy

Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

forest biome → litter layer → plant litter

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: California
Coordinates	Lat. (^o)	40.2526	Long. (^o)	-123.026	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: California

Coordinates

Lat. (^o)

40.2526

Long. (^o)

-123.026

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015054	Metagenome	257	Y
F091248	Metagenome	107	N
F098663	Metagenome / Metatranscriptome	103	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0233334_1002660	Not Available	1681	Open in IMG/M
Ga0233334_1002954	Not Available	1608	Open in IMG/M
Ga0233334_1003881	Not Available	1432	Open in IMG/M
Ga0233334_1009021	Not Available	959	Open in IMG/M
Ga0233334_1009733	Not Available	923	Open in IMG/M
Ga0233334_1010364	Not Available	894	Open in IMG/M
Ga0233334_1012046	Not Available	831	Open in IMG/M
Ga0233334_1012099	Not Available	829	Open in IMG/M
Ga0233334_1012932	Not Available	802	Open in IMG/M
Ga0233334_1014756	Not Available	749	Open in IMG/M
Ga0233334_1015424	Not Available	733	Open in IMG/M
Ga0233334_1015872	Not Available	723	Open in IMG/M
Ga0233334_1016956	Not Available	697	Open in IMG/M
Ga0233334_1019597	Not Available	648	Open in IMG/M
Ga0233334_1019921	Not Available	642	Open in IMG/M
Ga0233334_1020367	Not Available	635	Open in IMG/M
Ga0233334_1022026	Not Available	611	Open in IMG/M
Ga0233334_1022893	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	599	Open in IMG/M
Ga0233334_1025843	Not Available	564	Open in IMG/M
Ga0233334_1026496	Not Available	556	Open in IMG/M
Ga0233334_1027099	Not Available	550	Open in IMG/M
Ga0233334_1027743	Not Available	544	Open in IMG/M
Ga0233334_1030130	Not Available	522	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233334_1002660	Ga0233334_10026601	F015054	GGKMIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233334_1002954	Ga0233334_10029541	F015054	LEKNVLLKFVNEKVRKQDAKEDKSHWRKSDARARRIFVDSVRDHLVPQISQKKKTRKMLKTLNE
Ga0233334_1003881	Ga0233334_10038811	F015054	MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRNILKP
Ga0233334_1009021	Ga0233334_10090211	F015054	ENDLLKLVNEKVPELNVEEDKFHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKTLNE
Ga0233334_1009733	Ga0233334_10097331	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDSVRDHLVSQISQKKTTRKMFKTVKE
Ga0233334_1010364	Ga0233334_10103641	F015054	MIGMKVEKHHDGAINFISSKSRVLILEENDLLKFVNEKVPEPVAEEDKSHWRRSDARARRILVDLVRDHLVPQISQNKTTRKMFKTLKE
Ga0233334_1012046	Ga0233334_10120461	F015054	GMEVEDHLDGATNFISCKSRVLIVEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVAQISQKKTTRKILKP
Ga0233334_1012099	Ga0233334_10120991	F091248	MIHLRKDILLHNVHKFKLLKCHNVFTLQEEFTMSKRQKRKAPAVEEQTAIEVVPQKEYIYEDTQCISGIEPEYKWGEIYRLISRREVPDTGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLMGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKLEWIPLMFHV
Ga0233334_1012932	Ga0233334_10129321	F091248	MSEIRIAQCHKCYTWHEELTMSKRQKKKAPMVEEKPDVEVVTKTEYTYEDTQCVSGVEPEYKWGEIYRLISRREIPDMGLEEEPIYANIEKSAIMKVATRPELFPCSEVIRWILPHTNTATMLIGNVEGQGYAAFSPGYVALDYHLPEPQIFISDAWLDNIRMDLVETLKKMLLQGKLYRYRTSGEYDTASLRAPYRFIALMLNRIFRRANGRLFKFEWIPIMFHVATQGTIFNWASLVSSSLSSCLA
Ga0233334_1014756	Ga0233334_10147561	F015054	LDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVGEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKALKE
Ga0233334_1015424	Ga0233334_10154241	F015054	MKVEDHLDGATNFISWKSRVIILEEIDFLKLVNEKVPKPNAEEDKSHWRNSDARARRILVDSISDDLVPQISQKKTTREMFKTLKE
Ga0233334_1015872	Ga0233334_10158721	F091248	EEVPAAEVETRIEYIYEDTQCVTGVEPEYKWGDVYRMISRREVPDMGLEEAPIYANIERSAIMKVATRPELFPCSELMRWVLPHTNHNSMLTCNTEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRATEDYDTASLRPTYRFIALMLNRIFGRANGRLFKLEWVPLMFFVATEGTIFNWASIVSSSLSSCVAAALEGKERRRSEFYMSSILIDCIL
Ga0233334_1016956	Ga0233334_10169561	F015054	MIGMKVEDHLDGGTNFISWKSRVLILGENDHLKLVNEKVPEQDVEEDKSHWRKNDARARRILINPLRDHSVPQILQTKTTMKMFKTLKE
Ga0233334_1019597	Ga0233334_10195971	F091248	MSKRQKKKAPVVEEVPQAEAETKTEYIYEDTQCVSGVEPEYKWDDIYRLISRREVPDMGLEEEPIYANIEKSAIMKVSTRPELFPCSEVIGWILPHANTSSMIIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSDAWLDNIRMDLVETLKRMLLPGKLYRHRQNSEYDTASLRAPYRFVALMLNRIFGRAHGRLFKFEW
Ga0233334_1019921	Ga0233334_10199211	F091248	MSKRQKKKAPVVEEQTAIEADIPTEYIYEDTQCVTGVDPEYKWGDIHRMISRREVPDTGLEEEHIYTNIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHFPEPQVFLTNEWLDSLRMNLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRADGKLFKFEWIP
Ga0233334_1020367	Ga0233334_10203671	F015054	LESIVLILEENDLLKLVNEKVSEPDAEEDKSHSRKSDTRARKILVDSVRDHMVSQISQKKTTREMFKS
Ga0233334_1021135	Ga0233334_10211351	F091248	AIMKVATRLELFPCSEVIRWILPHTNIATMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSDDWLDNIRMDLVETLKKMLLQGKLYWYRAIGEYDTASLRAPYRFVALMLNRIFGRAHGRLFKFEWIPIMFHVATQGTVFNWASLVSSSLSSCVVAALGGESKKKFEFYMSSILVDCILCNQPFPGLKCVWDRERMPVYAAYRPLW
Ga0233334_1022026	Ga0233334_10220261	F091248	VDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAV
Ga0233334_1022893	Ga0233334_10228931	F098663	LXKVRLNPLTDKIPVVNLYLTINGLDKIPFGAKTSRYDPYELGYRRATKTFTKXCKTVPARHF
Ga0233334_1025843	Ga0233334_10258431	F091248	TAIEADLPTEYIYEDTQCVTGVDPKYKWGDIHRLISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCSELMRWILPHTNHGSMLICNIEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDFIETMKRMLLPGKLYRHRATEYYDTATLRAPYRFIALMLNRIFGRASGRLFKFEWIPL
Ga0233334_1026496	Ga0233334_10264961	F015054	SRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDGRARRILVDSVRDRLVPQISQKKMTKKMFRTLKE
Ga0233334_1027099	Ga0233334_10270992	F015054	MKVEDHLDAATNNISWKSRVLILEENDFLKLVKEKVPEQDVEEDMSHWRKCDARARRILVNSVRDHLVPRILQTKTTMKMFKTLKE
Ga0233334_1027743	Ga0233334_10277431	F015054	ATNFISWKSRVLILEENDLLKFVNEKVQEQDAEEDKSHWRKSDARARRILVDSDDYHLVSQISQKKMTRQMFKTLTE
Ga0233334_1030130	Ga0233334_10301301	F015054	MIGMKVEDHLDGATNFISWKSRVLILDENDLLKLVNEKFPEAGADEDKSHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFKTLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300023037: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-217

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences