3300023035: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-273

Overview

Basic Information

• IMG/M Taxon OID: 3300023035
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272145 | Ga0233342
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-273
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 93072583
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2198
  • Long. (^o): -122.9842
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015054	Metagenome	257	Y
F091248	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233342_1004686	Not Available	1082
Ga0233342_1005127	Not Available	1031
Ga0233342_1006691	Not Available	900
Ga0233342_1006918	Not Available	886
Ga0233342_1007059	Not Available	876
Ga0233342_1007169	Not Available	868
Ga0233342_1013314	Not Available	646
Ga0233342_1014100	Not Available	630
Ga0233342_1019426	Not Available	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233342_1004686	Ga0233342_10046861	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKNTT
Ga0233342_1005127	Ga0233342_10051271	F091248	MSKRQKKKAPAVEEVPAPDTEARIEYIYEDTQCVTGVEPEYKWGDIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDLVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRENGRLFKFEWV
Ga0233342_1006691	Ga0233342_10066911	F015054	MKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRKILNP
Ga0233342_1006918	Ga0233342_10069181	F091248	MVEEQSAIEIVTQTEYIYEDTQCISGMEPEYKWGDIYRLISRREVPDMGLEEEPIYANIEKSAIMKVATRPELFPCSEVIRWILPHTNTATMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSDDWLDNIRMDLVETLKKMLLQGKLYRYRTSGEYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWIPIMFHVATQGTIFNWASLVSSSLSSCLAAAQGGEAKKKSKFYMSS
Ga0233342_1007059	Ga0233342_10070591	F091248	MSKRQRKKAPAVEEVPAAEVETKIEYIYEDTQCVTGVEPEYKWGDIYRMISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLICNVDGQGYAAFSPGYVALAYHLPEPQLFLTDRWLDDLRMDFVETLKRMLLPGKIFRHRVTEDYDTATLRPTYRFIALMLNRIFGRANGRLFKLE
Ga0233342_1007169	Ga0233342_10071691	F015054	MIGMKVEDHLDGATNFISWKSRVLILDENDLSKLVNEKFLEAGVDEDKFHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFKTLK
Ga0233342_1013314	Ga0233342_10133141	F015054	LEENDLLKLVNENVPEPDAEEDKSHWRKSDGRARRMLVDSVRDHLVPQISQKKTTRKMFKTLKE
Ga0233342_1014100	Ga0233342_10141001	F091248	RMISRREVLDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGRLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQKKSEFYMSSILINCIICHQP
Ga0233342_1019426	Ga0233342_10194261	F091248	NIEKSAIMKVATRPELFPCSELMRWVLPHTNHNSMLTCNTEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDDLRMDLVETLKRMLLPGKIFRHRATEEYDTASLRPTYRFIALMLNRIFGRENGRLFKLEWVPLMFFIATEGTIFNWASIVSSSLSSCVAAALEGKERRRSEFYMSSILID