3300023034: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G0

Overview

Basic Information

• IMG/M Taxon OID: 3300023034
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272184 | Ga0233381
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung G0
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71840559
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041521	Metagenome	159	Y
F058575	Metagenome / Metatranscriptome	134	Y
F059515	Metagenome	133	Y
F072921	Metagenome / Metatranscriptome	120	Y
F096172	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233381_1000462	All Organisms → cellular organisms → Bacteria	4450
Ga0233381_1001395	All Organisms → cellular organisms → Bacteria	1971
Ga0233381_1005832	Not Available	1045
Ga0233381_1016408	Not Available	674
Ga0233381_1022800	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	588
Ga0233381_1025934	Not Available	556
Ga0233381_1026688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	549

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233381_1000462	Ga0233381_10004621	F041521	YAKNSFNNTPTIYMGGFLSFSNTNAQTTLENCLFAGKFEKGSNLTDEAFLGAFGTLRSVKAIKNCYYLADDGLAAVHSDSNLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR
Ga0233381_1001395	Ga0233381_10013952	F072921	MKKQMTLSTDRKSASEGEYIEIKWACDACPDSLYLAIDSERTQYSIAVSDSGTTRIPVPMSNGKMTVKLIGIISGKKVTESVDVRVKGAKRAKSNAPLSSRMKMFGEKMKAKWYVFRAQMKYWWLSQKKWQKALWIALLALWFGLLFSSIGRKPEVKVSSDQVQTAYLTAINL
Ga0233381_1005832	Ga0233381_10058322	F072921	MKSRLILTTDRKSASEGEYMEIRWACDACPDSLYLSINSGCTQYSIAVSDSGTTRIPVPKSNGKMTVKLIGVISGKKVTESIDVRVKSTKKAGTKAPLSSRMKMFGEKMKAKWYVFRAQMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0233381_1016408	Ga0233381_10164081	F058575	MEGNAKELLEKAEELRRNNRFGEAINYYRAAADAPDASDEIVRKSLASIGLMQEINGFVNVDLMNP
Ga0233381_1022800	Ga0233381_10228001	F058575	DMKARELLEKAEELRRNCRFGEAINFYRAAAAAPDATDEIKRKSLASVELMQEINGFVNVDLMNP
Ga0233381_1025934	Ga0233381_10259341	F096172	QQVPEYALTSELCYLLDGANMTRLLTYFAGKTVTFPTESEMTVVTNALLMYQYINIDGETFTAAQNKLEKLSKKEKDAVTDLYVKLLPIMKQYNIDRSQIQKG
Ga0233381_1026688	Ga0233381_10266881	F059515	YGYEFNYKIVDATYTIIQADELSEDMALWQKIAETDVVSDIYGMYDYVNFLCAWNTYYVNSGTDENGNVVPGYYLYPTDAVYLITTDGAQYNYGYKDGYFDSIISKIEAVDPNAFADLVANVRSAEVLAQKALAELENEHYTSEKKYLEQFGTEDLVYTLTIGEELTAEMQTLYSAFANWLGS