3300023033: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E0

Overview

Basic Information

• IMG/M Taxon OID: 3300023033
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272176 | Ga0233373
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung E0
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 65878509
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041521	Metagenome	159	Y
F048702	Metagenome / Metatranscriptome	147	Y
F072921	Metagenome / Metatranscriptome	120	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233373_1000450	All Organisms → cellular organisms → Bacteria	6108
Ga0233373_1007720	Not Available	971
Ga0233373_1017465	Not Available	640

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233373_1000450	Ga0233373_10004506	F041521	IYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLAAVHSDSDLKPGSDNVEITAVTEDDLRNNTIATQLGTLWEQGENYPVIRR
Ga0233373_1002205	Ga0233373_10022051	F048702	MAKKKKELDRRVFKKEGEDLQQWLIFTRRGSKAKAKKGKGSYDR
Ga0233373_1007720	Ga0233373_10077201	F072921	QMTLSTDRKSASEGEYLYIRWECNACPDSLFLSIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTESIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANIKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0233373_1017465	Ga0233373_10174652	F041521	GKIQENTSEVTIRNCAAYGTIKTNYEKNSYNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEAFLGAFGTLRSVNAIKNCYYLAHDGLEAVHSDSNLKPGSDNVEITAVTEDDLRNNTVATQLGTLWEQGENYPVIKK