3300023032: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C0

Overview

Basic Information

• IMG/M Taxon OID: 3300023032
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272164 | Ga0233361
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C0
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 68589688
• Sequencing Scaffolds: 1
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058575	Metagenome / Metatranscriptome	134	Y
F072921	Metagenome / Metatranscriptome	120	Y
F104182	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233361_1009645	Not Available	882

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233361_1008521	Ga0233361_10085212	F058575	MGYTAEQLFQMAQESRRNRRFGDAINLFRAASAAPDATEDIRRTCLASIDLIQEINGFVNTDLMNP
Ga0233361_1009645	Ga0233361_10096452	F072921	CPDSLYLAIDSGCTQYSIAVSDSGVTRIPIPRSNGKMTVKLIGVISGKKVTECIDVRVKATKKAGTKAPLSSRMKMFGEKMQAKWYVFRANMKYWWLSQKKWQKALWIALLALWLGLLFSSIGRKPEVKVSSDKIQTAYIFS
Ga0233361_1030423	Ga0233361_10304232	F104182	MMYYLTELQTRPDGVVNSTITARSSLATGLAFFYQRAAVAVTTTDFPAVALTLQDQYGTIIKNELFDTQYEAGE