3300023029: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-297

Overview

Basic Information

• IMG/M Taxon OID: 3300023029
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272151 | Ga0233348
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-297
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 79727771
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2526
  • Long. (^o): -123.026
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F038985	Metagenome / Metatranscriptome	164	Y
F091248	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233348_1003574	Not Available	1295
Ga0233348_1005841	Not Available	1021
Ga0233348_1010248	Not Available	769
Ga0233348_1015489	Not Available	626
Ga0233348_1015892	Not Available	617
Ga0233348_1016339	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	610
Ga0233348_1018654	Not Available	571
Ga0233348_1018702	Not Available	570
Ga0233348_1018743	Not Available	570
Ga0233348_1023594	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233348_1003574	Ga0233348_10035742	F015054	ATNFISWKSRVLMLEENDLLRLVNEKVPEPDIEEDKSHWRKSDARERRILVDSVRDRLVPQISQKKTTRKMFRTLKE
Ga0233348_1005841	Ga0233348_10058411	F015054	MIGMKVEDHLDGATNFISWKSRVLILGENGLLKLVNEKVLEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKATMKMFRTLKE
Ga0233348_1010248	Ga0233348_10102481	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLANEKVPEPNVEEDKSHWRKSDARARRILVDSVNDHLVPQMSQKKTTMKMFKTLNE
Ga0233348_1015489	Ga0233348_10154891	F091248	MSRRQKKKAPAVEEVSVPEAETKTEYIYEDTQCVTGVEPEYKWGEIHRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSEVMKWILPHTNHDTMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLVETMRKMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWIPLIFYVAT
Ga0233348_1015892	Ga0233348_10158921	F015054	MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVLEPDAEEDKSHWRKSDAKARRLLVDLVRGHLVLPILQKKMTSKMFKTLKE
Ga0233348_1016339	Ga0233348_10163391	F011735	MVKHVLEKGAYELVDYEGTALAEPRNGLYLKKYYAXSSAK
Ga0233348_1016452	Ga0233348_10164521	F091248	SAIMKVATRPELFPCSEVIRWILPHTNTATMLIGNVEGQGYVAFSPGYVALAYHLPEPQIFLSDAWLDNIRMDLIETLKRMLLPGKLYRHRATGEYDTASLRAPYRFIALMLNRIFGRAHGRLFKFEWIPIMFHVATQGTVFNWASLVSSSLSSCVAAALGGESKKKSEFYMSSILVDCILCNQPFPGLKCVWDRERMPVYA
Ga0233348_1018654	Ga0233348_10186541	F038985	FADHSMPKKRRLGRQNGSGSLGPRKLPRIVNCATIKETGKLKETVVGVQEE
Ga0233348_1018702	Ga0233348_10187021	F015054	MKVEDYLDGATNFISWKSRVLILEEIDFLKLVNEKVPKPNAEEDKSHWRKSDARARRILVDSIRDDLVPQISQKKTTREMFKTLKE
Ga0233348_1018743	Ga0233348_10187431	F015054	ATKFISWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHRRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKTLKE
Ga0233348_1023594	Ga0233348_10235941	F091248	IEQSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVGGQGYASFSPGYVSLAYHLPEPQVFLSNEWLDSLRMDLIDTMRKMLLPGKLFRHRVTEDYDTATLRPPYRFIALMLNRIFGRANGKLFKFEWIPLMFYVATEGTIFNWSGLVSSSLSSCIAAAKGGVQQR