3300023028: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-305

Overview

Basic Information

• IMG/M Taxon OID: 3300023028
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272153 | Ga0233350
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-305
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 84557709
• Sequencing Scaffolds: 22
• Novel Protein Genes: 22
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	21
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2526
  • Long. (^o): -123.026
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F034461	Metagenome / Metatranscriptome	174	Y
F091248	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233350_1002054	Not Available	1655
Ga0233350_1005681	Not Available	1048
Ga0233350_1005847	Not Available	1034
Ga0233350_1006281	Not Available	1000
Ga0233350_1006503	Not Available	982
Ga0233350_1006737	Not Available	966
Ga0233350_1010000	Not Available	794
Ga0233350_1010950	Not Available	759
Ga0233350_1011002	Not Available	757
Ga0233350_1012533	Not Available	710
Ga0233350_1013240	Not Available	690
Ga0233350_1013243	Not Available	690
Ga0233350_1013537	Not Available	684
Ga0233350_1013875	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	676
Ga0233350_1015550	Not Available	638
Ga0233350_1016981	Not Available	611
Ga0233350_1018433	Not Available	586
Ga0233350_1020163	Not Available	561
Ga0233350_1020632	Not Available	554
Ga0233350_1020906	Not Available	551
Ga0233350_1022081	Not Available	536
Ga0233350_1023087	Not Available	525

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233350_1002054	Ga0233350_10020543	F015054	LEESDFLKLVNEKVPKPNAEEDKSHWRKSDTRARRILVDSIRDDLVPQISQKKTTREMFKTLKE
Ga0233350_1005681	Ga0233350_10056811	F015054	MIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233350_1005847	Ga0233350_10058471	F015054	LESIVLILEENDLLKLVNEKVSEPDAEEDKSHSRKSDTRARKILVDSVRDHMVSQISQKKTTREMFKSLKE
Ga0233350_1006281	Ga0233350_10062811	F015054	MILMKIEDHLDGATNFISWKSRVLILGENDLLKLVNEKVPEEDVEEDKSHWMKSDARARRILVNSLRDHLVPQILQTKT
Ga0233350_1006503	Ga0233350_10065031	F015054	MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVEEDKSHWRKSDARARRILVDLVRDHLVPQISQKKTTRKMFKTIKE
Ga0233350_1006737	Ga0233350_10067372	F015054	LEENDLLKLVNEKVPEPDAEEDKSHWRKSDGRARRMLVDSVRDHLVPQISQKKTTRKMFKTLKE
Ga0233350_1010000	Ga0233350_10100001	F015054	MIGMKVEDNLDGATNFIFWMSIVLILEENDLLNLVNEKVPEPNVEEDKFRWRKSDARARRILVDSVRDHLVPQMSQRRRL
Ga0233350_1010950	Ga0233350_10109501	F015054	MIGMKVEDHLDGATNFISWKSRVLILEENDLLKFVNEKVQEQDAEEDKSHWRKSDARARRILVDSVRDHLVSQISQKKMTRQMFKTLTE
Ga0233350_1011002	Ga0233350_10110021	F091248	MSRRQKKKAPVVEEQTAIEADLPTEYIYEDTQCVTGVDPEYKWGDIHRMISRREVPDMGLEEEHIYANIEKSAIMKVATRPEMFPCAELMRWILPHTNHGSMLICNVEGQGYASFSPGYVALAYHLPEPQIFLSNEWLDNLRMDLIETMRKMLLPGKLYRHRATEDYDTATLRPPYRFIALMLNRIFGRANGKLFKFEWIPLMFYVATEG
Ga0233350_1012533	Ga0233350_10125331	F091248	MSRRQKKKAPAVEEVSVPEAETKTEYIYEDTQCVTGVEPEYKWGEIYRLISRREFPDMGLEEAPIYANIEKSAIMKVATRPELFPCSEVMKWILPHTNHDTMLMCNVEGQGSAAFSPGYVALAYHLLEPQVFLSNEWLDNLRMDLVETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWIPLIFYVATEGTVFNWASLVSSSLSSCVAA
Ga0233350_1013240	Ga0233350_10132401	F015054	MIGMKVEDHLDGATNFISWKSRVLILGENDPLKLVNEKVQEQDVEEDKSHWRKSDARARRILVNSVRDHLLTQILQTKTTMKMFKTLKK
Ga0233350_1013243	Ga0233350_10132431	F015054	DHLDXATNFISWKSRVLILEENDLLKLVNEKVLEPDVEEDKSHWRKSDAKARRILVDSVRDHLVLPILQKKTTSKMFKTLKEX
Ga0233350_1013537	Ga0233350_10135372	F011735	MWYGPFIISKVLYKGAYKLIDYNGIPLGQPHNGLYHK
Ga0233350_1013875	Ga0233350_10138752	F034461	MLGYDFEIIYKKGKQNVVADALSRKDEDVEALLYAISIIQPDWIAEANDEWKND
Ga0233350_1015550	Ga0233350_10155501	F015054	MIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233350_1016981	Ga0233350_10169811	F091248	VNSTMSKRQKKKAPVVEEVPQAEAETKTEYIYGDTQCVSGVEPEYQWGDVYRLITRREVPDMGLEEEPIYANIERSALMKVATRPELFPCPEVIGWILPRTDVSTMILKDVNDQGYAAYSPGYVALAYHLPELEVFMSDDWLSNIKMDLIETMKRMMLTGKLFRPRATNEYDTASLRAPYRFIALMLNRIFGRAHGRLFKMEW
Ga0233350_1018433	Ga0233350_10184331	F015054	NFAGKMIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLANEKVPEPNVEEDKSHWRKSDARARRILVDSVKDHLVPQMSQKKTTRKMFKTIKE
Ga0233350_1020163	Ga0233350_10201631	F091248	EIVPQIEYIYEDTQCISGIEPEYKWGEIYRLISRREVPDTGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNNNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQVFLSNDWLDNLRMDLVETLRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNHIFGRANGRLFKLEWIPLMFH
Ga0233350_1020632	Ga0233350_10206322	F015054	MIEMKVEDYLDGATNFISWKSRVLILGENDLLKLVNEKVPEQDVEENKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233350_1020906	Ga0233350_10209062	F015054	MKVEDHLDGATNFISWKSRDLILDENDLLKLVNEKVPEPDVEEDKSHWRKSNARARRILVDSVRDHMGPQISQKKTTRKMFKTLMEXXLLMATLDLY
Ga0233350_1022081	Ga0233350_10220811	F015054	MIGMKVEDHLDGATNFISWKSRVLILDENDLLKLVNEKFPEAGADEDKSHWKKSYARARRILVDSVRDHLVPQILRKKTTKKMFKTLK
Ga0233350_1023087	Ga0233350_10230871	F015054	MIGMKVEKHHDGAINFISSKSRVLILEENDLLKFVNEKVSEPVAEEDKSHWRRSDARARRILVDLVRDHLVPQISQNKTTRKMFKTLKE