NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300023023

3300023023: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-296



Overview

Basic Information
IMG/M Taxon OID3300023023 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0132900 | Gp0272150 | Ga0233347
Sample NameLeaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-296
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size68106032
Sequencing Scaffolds18
Novel Protein Genes18
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina1
Not Available17

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil And Plant Litter Microbial Communities From Temperate Forests In California, United States
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)forest biome → litter layer → plant litter
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)40.2198Long. (o)-122.9842Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015054Metagenome257Y
F091248Metagenome107N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0233347_1001260All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina1798Open in IMG/M
Ga0233347_1002786Not Available1333Open in IMG/M
Ga0233347_1003048Not Available1284Open in IMG/M
Ga0233347_1005108Not Available1033Open in IMG/M
Ga0233347_1005836Not Available974Open in IMG/M
Ga0233347_1006516Not Available930Open in IMG/M
Ga0233347_1007440Not Available877Open in IMG/M
Ga0233347_1007891Not Available854Open in IMG/M
Ga0233347_1010732Not Available746Open in IMG/M
Ga0233347_1010838Not Available743Open in IMG/M
Ga0233347_1012218Not Available702Open in IMG/M
Ga0233347_1014693Not Available642Open in IMG/M
Ga0233347_1014745Not Available640Open in IMG/M
Ga0233347_1014779Not Available639Open in IMG/M
Ga0233347_1017247Not Available594Open in IMG/M
Ga0233347_1017811Not Available585Open in IMG/M
Ga0233347_1018596Not Available573Open in IMG/M
Ga0233347_1023768Not Available510Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0233347_1001260Ga0233347_10012601F015054LDENVLLKLVNEKVPKAGAEEDKSHWKRGYTRARRILVDSVRDHSVPQISQKKTTRKMFKTLK
Ga0233347_1002786Ga0233347_10027861F015054VSIVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDGRARRILVDSVRYHMVPQISQKKTTREMFKTLKE
Ga0233347_1003048Ga0233347_10030482F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVPEPNVGEDKSRWRKSDARARRILVDSVRDHLVPQISQKKTTRKMFKALKE
Ga0233347_1005108Ga0233347_10051081F015054MIGMKVEDHLDGATNFISCKSRVLILGENDPLKLVNEKVQEQDVEEDKSHWRKSDARARRILVNSVRDHLVTQILQTKTTMKMFKTLKE
Ga0233347_1005836Ga0233347_10058362F015054SRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARTRRSLVNTVRDHMGPQILQTKTTMKMFKILKE
Ga0233347_1006516Ga0233347_10065161F015054MIGMKIEDHLDGAINFISWNSRVLILEENVLLKFVNEKVRKQDAKEDKSHWRKSDARARRIFVDSVRDHLVPQISQKKKTRKMLKTLNE
Ga0233347_1007440Ga0233347_10074401F015054MIGMKVEDHLDGGTNFISWKSRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233347_1007891Ga0233347_10078911F015054MIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVLEEDVEEDKSHWRKSDARARRILVNSVRDHLVPQIFQTKTTMKMFKTLKE
Ga0233347_1010732Ga0233347_10107321F015054LDENDLLKLVNEKFPEAGADEDKSHWKKSYARARRILVDSVKDHLVPQISQKKTTMKMFKSLKE
Ga0233347_1010838Ga0233347_10108381F091248EEAELTMSKRQKKKAPMVEEQSAIEVVTQTEYIYEDTQCVSGVEPEYKWGEIYRLISRREVPDMGLEEEPIYANIEKSAIMKVATRPELFPCSDVMRWILPHTNSNTMLIGNVEGQGYAAFSPGYVALAYHLPEPQIFLSNDWLDNLGMDLVETLKRMLLPGKLYRHRATEDYDTASLRAPYRFVALMLNRIFGRASGRLFKFEWVPIMFHVATQGTIFNWASLVSSSLSSCVAAALGGGEARKKYE
Ga0233347_1012218Ga0233347_10122181F091248PTEYIYEDTQCVTGVDPEYKWGDIYRLISRREVPDMGLEEEPIYANIEKSAIMKIATRPELFPCHEVMRWVLPHTNHGSMLICNVEGQGYAAFSPGYVALAYHLPEPQVFLTNEWLDNLRMDLIETMRRMLLPGKLYRHRATEDYDTASLRAPYRFIALMLNRIFGRANGRLFKFEWIPLIFHVATEGTIFNWSSLVSSSLSSCIAAAKGGVEQKKSEFYMSSILIDCILCHQ
Ga0233347_1014693Ga0233347_10146931F091248MSKRQKKKAPMVEEGPEVEVVTKTEYIYEDTQCVSGVEPEYKWGEIYRLISRREVPNMGLEEEPLYANIEKYSIMKVATRPELFPCSEVIGWIFPRADTTTMIIGNVEGQGYDAFILGYVALAYHLLEAQVFLSDDWLDSIRMDLVETLKKMLLQGKLYRYRQTGEYDTTSLRPPYRFIALMLNRIFGRAHGRLFKLEWIPIIF
Ga0233347_1014745Ga0233347_10147451F015054TKFIFWKSRVLILRENDLLKLVNEKVTEQDVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKATMKMFNTLNE
Ga0233347_1014779Ga0233347_10147791F015054MIGMKVEDHLDAATNFISWKSRVLILGENDLLKLVNEKVPEQDVEEDKSHWRKSDARARRILVNSVMDHLVPQILQTK
Ga0233347_1017247Ga0233347_10172471F015054LILEENDLLKLVNEKVPEPDAEEDKSHWRKSDGRARRMLVDSVRDHLVPQISQKKTTRKMFKTLKE
Ga0233347_1017811Ga0233347_10178111F015054KFADKMIGMKVEDHLDGATKFISWKSRVLLILEENDLLKLVNEKVPEPEAEEDKSHTRRSDARARRIMVDSVRDHLVPQISQKKTSRKMFKILKE
Ga0233347_1018596Ga0233347_10185961F015054MIGMKVEDNLDGATNFIFWKSIVLILEENDLLKLVNEKVAEPNVEEDKSRWRKSNARARRILVDSVRNHLVP
Ga0233347_1023768Ga0233347_10237681F091248LTMSRRQKKKAPAAEEVSVPEAETKTEYIYEDTQCVTGVEPEYKWGEIYRLISRREVPDMGLEEAPIYANIEKSAIMKVATRPELFPCSEVMKWILPHTNHDTMLMCNVEGQGYAAFSPGYVALAYHLPEPQVFLSNEWLDNLRMDLVETMRRMLLPGKLYRHRATEDYD
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