3300023022: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C1

Overview

Basic Information

• IMG/M Taxon OID: 3300023022
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0116274 | Gp0272165 | Ga0233362
• Sample Name: Fecal eukaryotic communites from dung pellets of Tule Elk in California, USA - Elk Dung C1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56102772
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Elk Feces → Fecal Eukaryotic Communites From Dung Pellets Of Tule Elk In California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 38.04
  • Long. (^o): -122.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051611	Metagenome	143	Y
F100397	Metagenome	102	N
F104183	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233362_1001490	Not Available	2073
Ga0233362_1008164	Not Available	858
Ga0233362_1021768	Not Available	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233362_1001490	Ga0233362_10014903	F051611	MVVDKVTKEMLFKLNVGDQKVFTLPNYGKARSAQSYANSMKKATMGTKEQRVFKAVIGDPNPDNGQCGVTITRIA
Ga0233362_1008164	Ga0233362_10081641	F104183	GALWAWEMLTQGRTVSEYEEQLRQDVCARFNIEKPERWQELLISETATMMADRDGMQQDILTEGRLLEKFDKNMNPYKESNPLYVHLKELQRSIGMQREHMGLTNKSSKKMESPKTHDVKDDPLGEYFEGIR
Ga0233362_1021768	Ga0233362_10217681	F100397	MMKKLIAILALSLSLILCMTACGAKMPYDLSGTTSVELHAYNNDSTEPFAKIVVDGEDVATIVEMFSSLKLKELDYTEPSIKGYDFWFKDADGNEIAKLSLPYRLSPWVVFKGTAYQDVNGGVDVDYLAQLVDMTVSAGPADKDDFGFSFKMIEGSFVRGERVGLSID