3300023018: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-233

Overview

Basic Information

• IMG/M Taxon OID: 3300023018
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0132900 | Gp0272141 | Ga0233338
• Sample Name: Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-233
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 58366655
• Sequencing Scaffolds: 19
• Novel Protein Genes: 19
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	17
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → litter layer → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 40.2198
  • Long. (^o): -122.9842
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011735	Metagenome / Metatranscriptome	287	Y
F015054	Metagenome	257	Y
F023843	Metagenome / Metatranscriptome	208	Y
F091248	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0233338_1002161	Not Available	1201
Ga0233338_1003819	Not Available	961
Ga0233338_1004018	Not Available	940
Ga0233338_1004073	Not Available	935
Ga0233338_1004308	Not Available	914
Ga0233338_1006089	Not Available	792
Ga0233338_1006426	Not Available	776
Ga0233338_1007895	Not Available	714
Ga0233338_1008541	Not Available	693
Ga0233338_1009114	Not Available	675
Ga0233338_1010136	Not Available	647
Ga0233338_1010314	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	642
Ga0233338_1010516	Not Available	637
Ga0233338_1010975	Not Available	625
Ga0233338_1011324	Not Available	618
Ga0233338_1014484	Not Available	558
Ga0233338_1017267	Not Available	518
Ga0233338_1017512	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	516
Ga0233338_1017961	Not Available	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0233338_1002161	Ga0233338_10021612	F015054	MIGMKVEDHLDGATNFISWKFRVLILGENDPLKLVNEKVQEQNVEEDKSHWRKSDARARRILVNSVRDHLVPQILQTKTTMKMFKTLKE
Ga0233338_1003819	Ga0233338_10038191	F015054	MIGMKIEDHLDGAINFISWNSRVLILEENVLLKFVNEKVRKQDAKEDKSHWRKSDARARRIFVDSVREHLVPQISQKKKTRKMLKTLNE
Ga0233338_1004018	Ga0233338_10040182	F015054	MIRMKVEDHHDGATNFISWKSRVFILEENDLLKVVNEKVLESDAEEDKSHWRKSDARARRILVDSVRDHLVPQISQKKTTRKMLKTLME
Ga0233338_1004073	Ga0233338_10040731	F015054	MIGMEVEDHLDGATNFILWKSRVLILEKNDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVRQISQKKTRKILKP
Ga0233338_1004308	Ga0233338_10043081	F015054	MIGMKVEDHLDGATNFISWKYRVLILGENDLLKFVNEKVREQDVEEDKSHWRKRDARARRILVNSVRDHLVPQILQTKTTMKMFKTIKE
Ga0233338_1006089	Ga0233338_10060891	F015054	MIGMNVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVPEPDAEEDKSHWRKSDCRARRILVDSVSDHLVPQISQKKTTRMILKP
Ga0233338_1006426	Ga0233338_10064261	F015054	LEENYLLKLVNEKVPEPDAEEDKSHWRKSDGRARRMLVDSVRDHLVPQISQKKTTRKMFKTLKE
Ga0233338_1007895	Ga0233338_10078951	F015054	LEENDLLKLVSEKVPEPNVEEDKSRWRKSDARARRILVDSVRDHLVSQISQKKTTRKMFKTLQE
Ga0233338_1008541	Ga0233338_10085411	F015054	MIGTKVEHHLDGATNFMSWKSRVLILEENDLLKLVNEKVQKLDSEEDNYHWRKSDGRARRILVDSVRDRLVPQISQKKMTKNMFRTLKE
Ga0233338_1009114	Ga0233338_10091141	F015054	MIGMKVEDHLDGATNFISWKSRVLILEENDLLKLVNEKVQEPDVEEDKTHWRKSDCRARRILVDSVSDQLVPQISQKKTTRNILKP
Ga0233338_1010136	Ga0233338_10101361	F023843	RTSRIEIEKFNCQNFELWKIKMEDLLVDWEQWIAVDPGTKPNAMSQ
Ga0233338_1010314	Ga0233338_10103141	F011735	VKEPLGVGKLNPMWHGPYVVKRVLEKGAYELVDYKVTALEEPRNGLYLKKYYA
Ga0233338_1010516	Ga0233338_10105161	F091248	MSKRQKKKAPAVEEVPAPDTEAKTEYIYEDTQCVTGVEPEYKWGEIYRLISHREVPDMGLEEAPIYTNIEKSAIMKVATRPELFPCPEVMRWVLPNTNHNSMLMCNVEGQGYAAFSPGYVALAYHLPEPQLFLTNEWLDNLRMDFVETMKRMLLPGKLYRHRATEEYDTASLRPTYRFIA
Ga0233338_1010975	Ga0233338_10109751	F015054	MIGMKVEDHLDGATNFISWKSRVLILGENDLLKLVNEKVLEQDVEEDKSHWRKSDARARRILVNSVRDHMGPQILQTKTTMKMFKILKE
Ga0233338_1011324	Ga0233338_10113242	F011735	MWYSPFVISKFLEKGVYELVDYDGIPLGKPRNGLYLKRYYA
Ga0233338_1014484	Ga0233338_10144841	F015054	LDENDLLKLVNEKVPKAGAEEDKSHWKRSYARARRILVDSVRDHLVPQISQKKTTRKIFKTL
Ga0233338_1017267	Ga0233338_10172671	F015054	MIGMKVEDHLDRATNFISWKSRVLILGENDLLKLVNEKVPEKDVEEDKSDWRKSDTRARRILVNSVRDHLVYQILQTKATMKMFNTLKE
Ga0233338_1017512	Ga0233338_10175122	F011735	FNPMWHGPYMVKRVLEKGAYELVDYEGTALAKPRNGLYLKKYYA
Ga0233338_1017961	Ga0233338_10179611	F015054	MIGMKVEDHLDGATNFIFWKSRVLILDENDLSKLVNEKFPEAGADEDKSHWKKSYARARRILVDSVRDHLVPQISRKKTTRKMFK