3300022919: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L119-311C-1

Overview

Basic Information

• IMG/M Taxon OID: 3300022919
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095510 | Gp0290980 | Ga0247810
• Sample Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L119-311C-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 726923592
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood2	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → agricultural field → plant litter
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013427	Metagenome / Metatranscriptome	271	Y
F023181	Metagenome / Metatranscriptome	211	Y
F034190	Metagenome / Metatranscriptome	175	Y
F041209	Metagenome / Metatranscriptome	160	Y
F051903	Metagenome / Metatranscriptome	143	Y
F057967	Metagenome / Metatranscriptome	135	Y
F065285	Metagenome	127	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0247810_10052162	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → unclassified Rotaria → Rotaria sp. Silwood2	1632
Ga0247810_10133978	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	921
Ga0247810_10139038	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	901
Ga0247810_10153391	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	848
Ga0247810_10158113	Not Available	833
Ga0247810_10169295	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	799
Ga0247810_10189192	Not Available	746

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0247810_10052162	Ga0247810_100521622	F041209	MCVAFVRLTHVRAVSAETCEQIAELRRKLQRSRTTHVLFLDETGERLSECPTGTLVLPGEQQYVEATETSSYSKRYDMIACTAGDRVLLPKIFSPKERKDAGVKGINGPMLLQFIDDALAQAVEGLDRYPLTLVLDRASIHLNVDAILQAFHDRGSQSIKDILLMPPNAAKRLSPLDNALFHDWRQEVRKHCPVTARTVTRVMNDAWMKMKPQAHYKHCGLTRLKDPYFDCPAPHEHRHG
Ga0247810_10133978	Ga0247810_101339781	F051903	CACLFSVSAEMCEEIATVRRKFQRIGTRRILVLDETHRRIGDVTERTIVLPGEPSTIETSATTHYAPRYDMIACCTSKEVMPPMIYAPKERGKGIDTEMLLQYIRNLLAQSAGALDRYPLFLMLDKSTIHNEGKIIETFHDWGCQELVEVIKMPTAAAKRLSPLDNSLFNVWRQRALNGPPLTRTNIKQRMSDAWNSITERDLLPQYRHCGLMRRQDVYFDCPNPAAHQHGS
Ga0247810_10139038	Ga0247810_101390382	F057967	VNRDAKTQSALIALARTRRMQRAHAHAYLHRNAPMPTLRASLGYMTGTACISDESTTTAHRMSLLGVARLEGVAYVVEELGAGESPIVYRLFLRGPRQGYLVPMHAWYEHDDDEVIVRAKIAQLAPRLEPLARTTSEAWMLSTRIVHRRALRVSGMELPIRAFALQLAVEPVSGHGSSGKTTVTAFLRPSAQLADVWAVPGTDAAIARISYTGIPSG
Ga0247810_10153391	Ga0247810_101533911	F013427	VIDLSGTCDLAVWCKLLRDKGWSGPRIAREIAKSEGYVNNLIRVVDRASPNVMLRWKLEQDAPDCACHVCATDWLVQICLLPHDVQDAELAQRLTTY
Ga0247810_10158113	Ga0247810_101581131	F034190	QPLLTIPPERIVPTPLHLFLGISNRIILDAFSELLGKERVEAALKSITTFHSAGCGGAADLHDLNGPEISKWIKKECSATLLSAATAASAVTAATSASHSVLSRWLQQLHHCLLRSGDWSAADIDAWRTVVSDIHQHWCAETSQKAFPKLHMLHHSIDFAERHRFLGRASEAQIESCHAFFNSLVHKQHRNQSGNTAERLRRCLADASLRAVQPLLKP
Ga0247810_10169295	Ga0247810_101692951	F023181	AYHLHPRGVVVSLLQLVQLFPRHLRVVELVTEIQGTFLVTSNTHGVDRLEPPPEAKIERLPLHATLTEVLERHTTRITELLRTYPNRQPVTYERIEDVIASVARAHVVMARHRQKVGGISRDELERLKGRPLNPTEEAFLREVQGPQPE
Ga0247810_10189192	Ga0247810_101891921	F065285	RDLDHSSTEIWWDEPFALVPIVHPQQWDPDGPELIQINPLESAVHPLLASILAPRIPQIHLETALSCLRYLQSGGHSVKSRKSLKPLLKSRYFTGLKMRPSLSRFRNRRHRHLSRRCLLDEQDFHSTWWGDHRRRPYDFIYGKSGVLVPLCFFSYRTECASNHDLWYTYRYALLILPFVLVNAPPDSHLASIATNCTFSTFCTAYPRETRKAKKYITQYLSRCRPIRAIRERVVVDVMSGMNVD