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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022864 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114820 | Gp0255757 | Ga0222665 |
| Sample Name | Saline water microbial communities from Ace Lake, Antarctica - #653 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 203541480 |
| Sequencing Scaffolds | 38 |
| Novel Protein Genes | 40 |
| Associated Families | 27 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria | 2 |
| Not Available | 21 |
| All Organisms → Viruses → Predicted Viral | 1 |
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1 | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 5 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | N/A | Depth (m) | 14 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004446 | Metagenome | 437 | Y |
| F007072 | Metagenome | 358 | Y |
| F010230 | Metagenome | 306 | Y |
| F018909 | Metagenome / Metatranscriptome | 232 | Y |
| F019093 | Metagenome | 231 | Y |
| F020325 | Metagenome / Metatranscriptome | 224 | Y |
| F029588 | Metagenome / Metatranscriptome | 188 | Y |
| F029620 | Metagenome | 187 | N |
| F039448 | Metagenome / Metatranscriptome | 163 | Y |
| F042665 | Metagenome | 157 | N |
| F046685 | Metagenome | 151 | Y |
| F049335 | Metagenome | 146 | Y |
| F057908 | Metagenome | 135 | Y |
| F060609 | Metagenome / Metatranscriptome | 132 | Y |
| F063346 | Metagenome | 129 | N |
| F067269 | Metagenome | 125 | N |
| F069687 | Metagenome | 123 | Y |
| F075651 | Metagenome | 118 | Y |
| F075727 | Metagenome | 118 | Y |
| F077343 | Metagenome / Metatranscriptome | 117 | Y |
| F077915 | Metagenome | 117 | Y |
| F081868 | Metagenome | 114 | Y |
| F088352 | Metagenome | 109 | Y |
| F094519 | Metagenome | 106 | Y |
| F096357 | Metagenome | 104 | N |
| F098516 | Metagenome / Metatranscriptome | 103 | Y |
| F103103 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0222665_1000328 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 30831 | Open in IMG/M |
| Ga0222665_1000983 | All Organisms → cellular organisms → Bacteria | 14515 | Open in IMG/M |
| Ga0222665_1005714 | Not Available | 3513 | Open in IMG/M |
| Ga0222665_1006928 | All Organisms → Viruses → Predicted Viral | 3043 | Open in IMG/M |
| Ga0222665_1007589 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 2834 | Open in IMG/M |
| Ga0222665_1012688 | Not Available | 1954 | Open in IMG/M |
| Ga0222665_1014352 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.BinA104 | 1793 | Open in IMG/M |
| Ga0222665_1021114 | Not Available | 1369 | Open in IMG/M |
| Ga0222665_1022291 | Not Available | 1318 | Open in IMG/M |
| Ga0222665_1023110 | Not Available | 1288 | Open in IMG/M |
| Ga0222665_1024410 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 1238 | Open in IMG/M |
| Ga0222665_1029417 | Not Available | 1087 | Open in IMG/M |
| Ga0222665_1033032 | Not Available | 1002 | Open in IMG/M |
| Ga0222665_1033302 | Not Available | 996 | Open in IMG/M |
| Ga0222665_1033501 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 992 | Open in IMG/M |
| Ga0222665_1035517 | Not Available | 952 | Open in IMG/M |
| Ga0222665_1039326 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Psychrobacter | 887 | Open in IMG/M |
| Ga0222665_1042134 | Not Available | 847 | Open in IMG/M |
| Ga0222665_1042295 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1 | 844 | Open in IMG/M |
| Ga0222665_1042891 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 836 | Open in IMG/M |
| Ga0222665_1047148 | All Organisms → cellular organisms → Bacteria | 784 | Open in IMG/M |
| Ga0222665_1050495 | Not Available | 748 | Open in IMG/M |
| Ga0222665_1053808 | Not Available | 717 | Open in IMG/M |
| Ga0222665_1054132 | Not Available | 715 | Open in IMG/M |
| Ga0222665_1054786 | Not Available | 709 | Open in IMG/M |
| Ga0222665_1057136 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 688 | Open in IMG/M |
| Ga0222665_1057754 | Not Available | 684 | Open in IMG/M |
| Ga0222665_1060784 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 660 | Open in IMG/M |
| Ga0222665_1060989 | Not Available | 659 | Open in IMG/M |
| Ga0222665_1061530 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 655 | Open in IMG/M |
| Ga0222665_1067498 | Not Available | 616 | Open in IMG/M |
| Ga0222665_1071594 | Not Available | 593 | Open in IMG/M |
| Ga0222665_1071607 | Not Available | 593 | Open in IMG/M |
| Ga0222665_1073290 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 583 | Open in IMG/M |
| Ga0222665_1075354 | Not Available | 573 | Open in IMG/M |
| Ga0222665_1078846 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 555 | Open in IMG/M |
| Ga0222665_1088453 | Not Available | 515 | Open in IMG/M |
| Ga0222665_1090494 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. G11 | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0222665_1000328 | Ga0222665_10003281 | F063346 | NKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFDVQIVASEITTKPSYHVEITYTGQEF |
| Ga0222665_1000983 | Ga0222665_10009834 | F063346 | MYSTIYNKDKATRPPRLSEPTKGRRALSTARDDGQERLPHSTFDVERSMFTRLRRRQRRPWFDVQIVASEITTKPSYHVEITYTGQEF |
| Ga0222665_1005714 | Ga0222665_10057142 | F067269 | MIKSHTGSYTCALERQLPDSDASFFWDTSDSKKKRKGYRDGLKYDAVSGTKRKRYRGYDIVYTRRKNSSFCAHTIDVLGEGVGFEKNTPESEDTEEVYAMFDEWIDNNNNNKTKTEQTYDDRDRNP |
| Ga0222665_1006928 | Ga0222665_10069286 | F094519 | MDMIKQPEQLTAGVTMIGTSSWGSQTGGIGSIMGSTWSSKIIFDAQPDRVLSKYFIEFNDLMGNNDVTIVIPKIGDVNLMGGRAGSIEGVARVLTKFDSADNITVNLTSADVKLGGCSVSFETASATRVSIIEMAHKQLVRQYLK |
| Ga0222665_1007589 | Ga0222665_10075897 | F004446 | VEADKLVALDGYQMLTIELPDGCHVGTECFTQGMDAPRMPGATGTPQGAGFILSCDATDKAFKAKASGGDLWVYGDIETGILQFVANHGKGGEMTRVGVLEFSVIDGTYPDWRRVVAKGDGGTSSISYDPALLAKLIKAADVIEKGRAVRLTGGATPGDPIKVEFKGLGRLRGTLYPVRWKGV |
| Ga0222665_1012688 | Ga0222665_10126886 | F103103 | VAPCLRLKSDKPGVPDGFVCGFHPIYEYGGFLFEVHRYHGPMPLRRSDLDPRKNTPKGFWDMWERFKVLSDEAKAAFLYEEALHVQKG |
| Ga0222665_1014352 | Ga0222665_10143521 | F077343 | MSNYQPKCYRTEGGDKTVIASGGTLAMEPGSFIQFANPTGASDYFVDGNVSTTGSGTIDSPYKTIAEAIAASDISIALTANRWWARRNRIFVMGDTLTETLVKFPTKCDVIGLGSYDANTQPGIVGHHAPVGESYGTRFFNIKFNGVATATPVFTLTSETSGLQLQSCTLDGNAGTMTIGVQATASPFLVINDCDFVGTFVTSYLTFGTGQAGRTRITNNRMLGTAAKGIVAGSGMTSSWTPLIDGNIVHATGLTIDDDADKFSCVNNRLITSANIATTTAGYDFNLALACGNILTGLNGVAATVPFAVTAE |
| Ga0222665_1021114 | Ga0222665_10211142 | F007072 | MELSKLGKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTEDSVAYNVTGDLQTEIGNNTSIAGIILTISLVGIVLTILIGVFIGVRGGTSRV |
| Ga0222665_1021114 | Ga0222665_10211144 | F077915 | TSGLFELSKYIGISATAGLFWPVMLFVIWIVSFLGFKQYSTSRAWTFASFFCSILGIFLVVLNLMAPRWMYLCIFLTLIGLVWLKLEAQ |
| Ga0222665_1022291 | Ga0222665_10222913 | F029588 | MKYSFWTGIVKTFKNSAVLLVPFLLAMIAGVPSEYAWLTGPICYGLKNWYSNKK |
| Ga0222665_1023110 | Ga0222665_10231101 | F067269 | MIKSHTGSYTRALDRQLPDSDACFFWDTTDSKKKRKGYQDGLKYDAVSGTTRERYRGYDIVYTRLKNSNFCAHTIDVLGEGVGFEKNT |
| Ga0222665_1024410 | Ga0222665_10244101 | F057908 | MVKGAIQMEIRTVLVRKDGVKHVFIPKKSKIQGGEQVLITNNLNLINKFKREENK |
| Ga0222665_1029417 | Ga0222665_10294171 | F019093 | LAAGDSDGVMQAKFYHRFAVDCFTAQGLAERAALELRDEINVALG |
| Ga0222665_1033032 | Ga0222665_10330322 | F098516 | MTISKATSFGALTDHFAILETVHDAGTLADIMVLVASSKVPRAKTRADAQDANEDIAASAYSGNDAGAIYEVSSTYALKSGTLDLSDLVIGELAVQIMAESLGLTTANGGWPQITVAGFLGLQTITAPTSFTNQFTLPAISVIGMKQAQVLGFTVSAGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRVDDAPAWELAAVLTDSPFLAEVTADPGEDQGQAAWHTAAGAAGLSLARLAT |
| Ga0222665_1033302 | Ga0222665_10333023 | F046685 | IVSQLDPENQLKEIEMRIRGYKRNVFTRDWEKIDPDSPEPPKLLISRFISYLSSIMNQNTTQGNLSDRQINALMSQAVNYTADELDGNSAIYNLDNNYTERTRIGHIMLNSMFFTLNRSLNGQEGKRMWKAMTISDNLTQDDKGKFGEALKFWK |
| Ga0222665_1033501 | Ga0222665_10335012 | F096357 | MNKLLDHPIIKRLHRESSVTLTDLLDRKLFIEPPAEPCGYRHPSVWFLCYQEDLAQAESERLRAARKRNPRLILAAALVVAGATGKLSEEQKNMAFYFTRYVEAHEYELDQLVRRSTGSHNSAEIRKEEAAERMETAFSLWLKLDKPERDKCAIIAKRMGCKVDTVREWRRKGWRSG |
| Ga0222665_1035517 | Ga0222665_10355172 | F046685 | MQQQPDSQMPYQSVPVSSDELYANAVQEDKIKNIISQLDPENQLKEIEMRIRGYKKNVFTHDWEKIDADAPEPPKLLISRFISYLSSIMNQNTTQGNLSDRQINALMAQAINYIADELDGNSNIYDLNNNYTERTRIGHIMLNSMFFTLNRSLNGQEGKRMWKAMSLSDNLTQENNKFSEALKFWK |
| Ga0222665_1039326 | Ga0222665_10393262 | F049335 | VTVTVHPRERSVVIAASPVADGADPPDWSNTRVPAAIPDATSDTRMLSMLVSVRSVLVNASAKLPPFILSKALAGKLVRLVQFCQALLKLVPADVSMSGKLVRLLQLYHVA |
| Ga0222665_1042134 | Ga0222665_10421342 | F019093 | QQWGGMRLAAGDSDGVMQAKFYHRFAVDCFTAQGLAERAALELRDEINATLG |
| Ga0222665_1042295 | Ga0222665_10422951 | F010230 | PLLVLINGNELRLVQFCQVWKKLVPLLVLINGNEVRLLQSSQARVKLVPLLVFINGNELRLLQLLQVWKKIVPLLVLINGNELRLLQLPQVEPKSVPSLVLINGNELRLLQLFQVWLKLMPLLVSINANEVRLVQFRQA |
| Ga0222665_1042891 | Ga0222665_10428911 | F010230 | LLVTINGNELRLVQFRQVWLKSVPLLVSINSNEVRLLQFHQVDSKLVPLLVSINGNELRLVQSRQVAIKLVLLLVLINGKELRLLQLYQVELKVVPLLVSINSNEVRLVQFSQVEVKLVPLLVSINGNELRLLQLFQAKLKLVPLLVSINGNELRLLQLCQVE |
| Ga0222665_1047148 | Ga0222665_10471481 | F039448 | LRKYAQMGEDVTIRAWQSLAADGSWKTNPDRKFPMIDVRCSPPGHDDNQSTLQVQCAILMGTNTDDDKSHAFIAGMYEAVQGVCDTLFAQFRTGVFTGDGKEEIAYFLARVVAETSADAFQFGGLTFGDGLAPADDNGINMIGITMIVHYGRSDF |
| Ga0222665_1050495 | Ga0222665_10504951 | F029620 | AQQLRMLPASSGGAAQVFPLRQGLIDITTGTVTDPVSGKRPLIAHCVADGSLTLTWQDTSATVVSFIAGDDFSMVEAEAVAVTTGSFHFA |
| Ga0222665_1053808 | Ga0222665_10538083 | F042665 | MTSPKLSFATLILLSSVVTVVVTLGVMPLLALTGSVSGLFFAPAAGMAAGYSAARWLGGYIDDK |
| Ga0222665_1054132 | Ga0222665_10541323 | F020325 | MMIRNWSDLKYEVADKLFGKELDEAYKMGMRIGAEYATRKLSFEVSLKRRLTLTKTEERGYDYAIAAVARIKPEIASQTGASV |
| Ga0222665_1054786 | Ga0222665_10547861 | F077915 | MAVTDYYVAPTGNETAGLFELSKYIGISATAGLFWPVILFVIWVVSFLAFKQYSTSRAWTFASFFCSILGIFLAVLNLMSPKWMYLSIFLAL |
| Ga0222665_1054786 | Ga0222665_10547862 | F075727 | GWVARDFIIAMLMFSGVLAIWVLMIGSVANDYGNTDVIDPEFSEKFDKFSEETDRAGEMWEAATSEGGLSLVGAADLLFFSTFKVISLVFNSVVAAGQQMAGFGEFFGIPSEISTIFSVLFFTILTVSIVFIIISSVRSGREL |
| Ga0222665_1057136 | Ga0222665_10571362 | F010230 | VPLLVLINGNELRLLQLSQVWLKLVPLLVLINGNELRLLQFRQVWLNLMPLLVSINGNELRLVQLYQVKPKSVLLLVSINGNEARLLQFRQVELNLVILLVLMSGKLVSPVQFS |
| Ga0222665_1057754 | Ga0222665_10577543 | F075651 | MVKDEKKAVKQKAMFYFSEKLKCHVKKVPTGFVNGIIKSELENNTFYWFEDLRTHGKDERLFLDEIFDIKDYEDEV |
| Ga0222665_1060784 | Ga0222665_10607841 | F096357 | PSVWFLCYQEDLAQAEHERLRAARRQNPSLIHAAALVVAGATGKLSEEQKTMAFYFTRYVEAREYELDQLVRRSTGSHNSAEIRKEEAAERMETAHRLWLKLDTPERDRCAIIAKRMGYPVDTVRKWRRKGWRSG |
| Ga0222665_1060989 | Ga0222665_10609893 | F018909 | MKWIKVAIGAVIAISVIPVIVTSVTALTGAGGDLESTVAGTLLDLAPLVFVASVLAFLFTKTGSAD |
| Ga0222665_1061530 | Ga0222665_10615301 | F010230 | VSINGNELRLLQFCQVELKLVPLLVSINGNELRLLQFCQVELKLVPLLVSINGNELRLVQSRQVELKLVPLLVTINGNELRLLQLYQVEVKLVPSLVSINGNELRLLQLYQVKPKLVPLLVSINANEVRLVQFRQVE |
| Ga0222665_1067498 | Ga0222665_10674981 | F010230 | VQGQPLNTPAGKSAKAVQFRQVWLKLVPLLVSINGNEVRLLQPSQVWLKVVPLLVSINGKELRLLQYRQVKLKLVPLLVSINGKELRLLQLFQVALNLVPLLVSINGNELRLLHSRQVESKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLLQFRQVELKLVLLLVSINGNELRLLQLYQAKLKLVPLLVSINANE |
| Ga0222665_1071594 | Ga0222665_10715942 | F088352 | MFIGNRIKITSQETTNYVIREIQTQEQLEKYRELEGYGIEVLPVIHSF |
| Ga0222665_1071607 | Ga0222665_10716072 | F069687 | MEELTKKITTILDQFAKEEMQNRLSQFSMIALKEMILNEVKNYKPKNEVIGKDAKK |
| Ga0222665_1073290 | Ga0222665_10732902 | F010230 | HQVSLKSVPLLVLINGNELRLLQFFQALGKSVTLLVSINGNELRLVQFSQVEVKLVALLVLINGNELRLVQFSQAKRKLVPLLVLINGNELRLLQFRQVESKLVPLLVLINGNELRLVQFHQVSLK |
| Ga0222665_1075354 | Ga0222665_10753541 | F060609 | MNELQKSESVSVSRREFCKKAIKRSSVAAAVGVAGYLAYKKPAVRSFFGAKDAYAASTAAGKFSLKGDSD |
| Ga0222665_1078846 | Ga0222665_10788461 | F010230 | LLASINGNELRLLQSRQVWLKLVPLLVSINGKELRLLQLVQVELKVVPLLVSINGNELRLLQLYQVKLKLVPLLVSINGNELRLVQSRQVELKVVPLLVSINGKELRLLQLIQVKLKLVPLLVSINGNELRLKHSRQVE |
| Ga0222665_1088453 | Ga0222665_10884532 | F081868 | SANSYGISTAIWDNTNKAGKEYQSISLNGSTKLPDGTYKNRTIFFPSDLENLINSLTELKEKADEAGIKTAFELKKE |
| Ga0222665_1090494 | Ga0222665_10904941 | F096357 | MNKLLDHPIIKRLHRESSVTLTDLIDRKLFIEPPAEPCGHIHPSAWDLFYQEDLQPPESERLRAARKRNPRLILAAALVVASVTGKLSKEQKNMAFDFTRYVEAHEYELVQLVRSRTGGVNTAEKRKEEAAERMETAHSRWLKLDTPERDKCAIIGKRMG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |