NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022855

3300022855: Saline water microbial communities from Ace Lake, Antarctica - #935



Overview

Basic Information
IMG/M Taxon OID3300022855 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0114820 | Gp0255769 | Ga0222677
Sample NameSaline water microbial communities from Ace Lake, Antarctica - #935
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size137224766
Sequencing Scaffolds31
Novel Protein Genes34
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available14
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae1
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B181
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS11
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSaline Lake Microbial Communities From Various Lakes In Antarctica
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biomesaline lakesaline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Hypersaline (saline)

Location Information
LocationAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)N/ADepth (m)16
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003151Metagenome504Y
F007072Metagenome358Y
F008481Metagenome332Y
F010230Metagenome306Y
F014583Metagenome261N
F025662Metagenome200Y
F026204Metagenome198Y
F029588Metagenome / Metatranscriptome188Y
F031722Metagenome181N
F035203Metagenome172N
F042665Metagenome157N
F050310Metagenome145Y
F052986Metagenome141Y
F054555Metagenome139Y
F058677Metagenome134N
F060609Metagenome / Metatranscriptome132Y
F063346Metagenome129N
F064414Metagenome128Y
F075727Metagenome118Y
F077964Metagenome117Y
F078009Metagenome117Y
F081868Metagenome114Y
F088315Metagenome109N
F098573Metagenome / Metatranscriptome103Y
F102576Metagenome101Y
F103103Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0222677_1000470Not Available15228Open in IMG/M
Ga0222677_1005050All Organisms → cellular organisms → Bacteria → Proteobacteria2729Open in IMG/M
Ga0222677_1006627All Organisms → Viruses → Predicted Viral2285Open in IMG/M
Ga0222677_1008523All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae1918Open in IMG/M
Ga0222677_1010408All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon1678Open in IMG/M
Ga0222677_1010648All Organisms → cellular organisms → Bacteria1655Open in IMG/M
Ga0222677_1011853Not Available1539Open in IMG/M
Ga0222677_1012052Not Available1524Open in IMG/M
Ga0222677_1013100Not Available1442Open in IMG/M
Ga0222677_1013989Not Available1378Open in IMG/M
Ga0222677_1016108All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1251Open in IMG/M
Ga0222677_1017353Not Available1189Open in IMG/M
Ga0222677_1017941All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B181161Open in IMG/M
Ga0222677_1018055All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales1156Open in IMG/M
Ga0222677_1018959All Organisms → Viruses → Predicted Viral1119Open in IMG/M
Ga0222677_1026796All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales887Open in IMG/M
Ga0222677_1027063All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1881Open in IMG/M
Ga0222677_1028022All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.862Open in IMG/M
Ga0222677_1028174Not Available859Open in IMG/M
Ga0222677_1036953Not Available716Open in IMG/M
Ga0222677_1040904All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium672Open in IMG/M
Ga0222677_1041199All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales670Open in IMG/M
Ga0222677_1044870Not Available634Open in IMG/M
Ga0222677_1046553All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.619Open in IMG/M
Ga0222677_1049716Not Available594Open in IMG/M
Ga0222677_1052503Not Available573Open in IMG/M
Ga0222677_1056080All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.549Open in IMG/M
Ga0222677_1057543All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi541Open in IMG/M
Ga0222677_1061240Not Available519Open in IMG/M
Ga0222677_1061256Not Available519Open in IMG/M
Ga0222677_1062881Not Available511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0222677_1000470Ga0222677_100047019F081868MTDKQKTKKLPLAKGNSYGVSTAIWNNTNKAGTKYQSISLSASTKQTDGSYKNRTIFFPSDLENLIAALTELKANADAEGIITGFVEKK
Ga0222677_1005050Ga0222677_10050507F088315MARGKLYMPSDTDRIFVERAVMAGTPIEKIAGCLNLHDDTLRKHFRYEIMTGRERLKGDAIRVLVDSLTDNSLDAAKFVLGRVAGWTEKSVVDNTSSDKSMTPTRIVIEAAKSDDQHDD
Ga0222677_1006627Ga0222677_10066271F007072MELSKIQKKGQLSLGDAPTVVLLVGLVFLVMATIAFVGEKYGNSMVAQQTVTATCNTTSGIYTGCGAAYNVTQDLQTEIGNNTSIAGIVLTISLVGIVLTILIG
Ga0222677_1008523Ga0222677_10085231F063346SDPPRLSEPTKGRRALSTARDDGQERLPHSTFDVERSMFDVQIVASEVTTKASYHVEIT
Ga0222677_1010408Ga0222677_10104082F064414MGFGEIADKMPFVGGSGGGIASDAMYSIIGITILLLCGFALWWFLKKRKTWNIKVEFKIPRNIKKVKTKAGLIKIIGTLNKEWGKGFYDAVKGSVFIKRKGKKPVAMKPFDVKQYLSTGNILTVVQIGIEDYRPIRDESYIELKDVNGNEGALVQAVIDTSESKSWKNTFERESKMTYSIKNWIAEHGALVAMGLVLLMNLIGFSIVIGRMPK
Ga0222677_1010648Ga0222677_10106481F063346MYSTIYNKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFDVQIVASEITTKPSYHVE
Ga0222677_1011853Ga0222677_10118532F029588MAKKVDYSFWIGLSKTVKNSAYLLVPFAIALLSGIPNEYAWLAGPIVYMLKNYAQNR
Ga0222677_1012052Ga0222677_10120522F077964MKTKRLLIVFSLILASFILMLYSTYAFAQTAESKSSPPTIQKIAPNSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPVAQKTALKKLYKTVLAMLKQMDLSK
Ga0222677_1013100Ga0222677_10131001F075727FIIAMLLFSGTLAMFVLMIGSLASDYDNTDVVDAEFSAKFDKFSEDTDRAGEMWESATSEGGLSLVGTADLLFFSTFRVISLVFSSVVAAGQQMAGFGEFFGIPSEISSIFMVLIFTILTVSIVFIIISSIRSGKEL
Ga0222677_1013100Ga0222677_10131004F007072MELSKLGKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYGNSIAAQQTLTATCNNTLNGGTGTVYSGCGSAYNTTVDLQTEIGNNTSIAGIVLTISLVGIVLTILIGVFVGVRGGTAEDPSRP
Ga0222677_1013989Ga0222677_10139893F058677MNQINAEELFQIIGEQLMTIRKQNQEIMRLQTEVTKLKPKEEVKKNGQRNDK
Ga0222677_1016108Ga0222677_10161082F077964MKKLIVLAVAILFLLSPVMAFCQTAESKISPQTIQKIAPNSYYYNYNITEIQKEPEGGGEAETFYQYNYVRIQGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLP
Ga0222677_1017353Ga0222677_10173533F078009MTREKIKLTQTQLDRLKGLDADTDWLSEEIRRAEYVGLDVAELKDRFEKMSQIRSRMIEEYSK
Ga0222677_1017941Ga0222677_10179413F010230VPLLVLINGNELRLLQLSQVWLKLVPLLVLINGNELRLLQLLQVEKKLVPLLVSINGNELRLLQLYQVEPKLVPLLVSINANELRLLQLYQVKPKLVPLLVSINGNEARLLQFRQV
Ga0222677_1018055Ga0222677_10180552F063346MYSTIYNKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKPSYHVEITYTGQEL
Ga0222677_1018959Ga0222677_10189591F054555MSCHSSVRDFVVGIDYDSIEEDKGHMTLRRKVSLDELIEEIKSILLEGSHYPQFPPEANPTITYAWDLNNQEDGDCYHEIMKELEKDNRKEVS
Ga0222677_1026796Ga0222677_10267961F026204MQDSTLPLTDAPCALAAHGLATTYQRLWVAVVAGQVPGVRVGKRWHVREADLPIIAKTLKRGVSS
Ga0222677_1027063Ga0222677_10270631F010230LLVSINGNELRLVQSRQVELKLMPLLVLINGNEVRLVQLYQVKAKLVPLLVSINGNELRLLHSRQVESKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLLQFRQVKLKIVPLLVLINGNEVRLVQSHQVWLK
Ga0222677_1028022Ga0222677_10280221F025662AKLIKAADVIKKGQAVRLTGGATPGDPIKVEFKGLGRLRGTLYPVRWKGV
Ga0222677_1028174Ga0222677_10281741F042665MTPPKLSFATLILLSSVVTVVVTLGVMPLLALTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK
Ga0222677_1036953Ga0222677_10369531F031722TQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASAIHTQRIAMGDLKP
Ga0222677_1040904Ga0222677_10409042F063346LSEPTKGRRALSTARDGGQERLPHSTFLPRETFFLFHWGDVERSMFDVQIVASEITTKPSYHVEITYTGQEF
Ga0222677_1041199Ga0222677_10411991F014583MTTRDTRRNFLRLLDQTWPGVRSEFVAAMRQARAGVDMKALEAAIARGDVD
Ga0222677_1044870Ga0222677_10448702F060609MNELEKSESVSVSRREFCKKAIKRSSVAAAVGVAGYLAYRKPAVRSFFGAGDAYAANTGAGSFSLKGDSN
Ga0222677_1046553Ga0222677_10465532F003151PGDRVTHKPTGEEWTLAQVYGPYVVPAGPTPWTFGLAIDCTTTEELEACTRACDAVVL
Ga0222677_1049716Ga0222677_10497162F054555MAALVMNCPSRVGDFVVGIDYDSMEEDKGHMTLRRKVPITELIEEIKEIMSKGSYYPQFPASANPSITYAWDLGNNDDGDCYHEIMSELDKDNRKEVIY
Ga0222677_1052503Ga0222677_10525032F050310KMAQDMQGFIIGIVIVGVTLVIGIYVAATIAGTMVDGSSAQNASNSLVTALAGGSAWITILVVVGFAVIVLGMLSEGLGKAAGGMSGPVY
Ga0222677_1054050Ga0222677_10540501F098573SYRMTGVSQALGMDTKQAGTWIALETEQPHAIQPRALWGLVQWLGQLSPAQLNLALGVDPPEYILEDEKHVKECGQKAYVPMIYAPKEALIWWVDYLHSASEDAIRNSLERFKAISDCLSHIVGATVDGWEGAQNALRAALPGIALEECHFHALLKLGKHLATYRRQRKQAGKPVSDTEEANIREAF
Ga0222677_1056080Ga0222677_10560801F052986TMIEHALVRYGYGTLIQVRKMDTQDFLDAVEYQEITSAIEQYRMEQAHRER
Ga0222677_1057543Ga0222677_10575431F102576MNDLLMLEKYFPEGNLEGGIDLANRLGWGISVQMAGDGYVVSSGDEPILRAEHKDALQSFIYGLGLAYAILPEKVFISLEKALKDL
Ga0222677_1059117Ga0222677_10591171F035203NGVDNTISRQEQIWIDHEGGGTRSGVLSPRIGNRTSAVSAGTTVYFQLLIDNNSSNDTWTMLFPDSCTFQITETLDNDGGNDLNLNTGDIQADSAIFNSLNIQAGSSAGKAVIGRTQIGNDAFSNMMALSINGNVGATNYGFAQIANNQTIMNAQSTSTYNSFRVQNQEIASINDVG
Ga0222677_1061240Ga0222677_10612401F031722HQMDETATTQTPTQKATKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP
Ga0222677_1061256Ga0222677_10612562F103103RATRPIRGGVAPCLRLKSDKPGVPDGFVCGFHPIYEYGGFLFEVHRYHGPMPLRRSDLDPRKNTPKGFWDMWERFKVLSDEAKAAFLYEEALHVQKG
Ga0222677_1062881Ga0222677_10628811F008481MDIEVKIDADCVSTEYETILFVKSLMDYKFVERLQFIKSTYRFARADFIILNTENIKSIIVECKSFKQIPSFLNKSKVDALLKHYKDPFIVIKHETAYYWLRVNAIDWSLLPIINEELAYEVSGCLSNDYDEL

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