Basic Information | |
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IMG/M Taxon OID | 3300022855 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114820 | Gp0255769 | Ga0222677 |
Sample Name | Saline water microbial communities from Ace Lake, Antarctica - #935 |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 137224766 |
Sequencing Scaffolds | 31 |
Novel Protein Genes | 34 |
Associated Families | 26 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
Not Available | 14 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → Viruses → Predicted Viral | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae | 1 |
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 1 |
All Organisms → cellular organisms → Bacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales | 2 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1 | 1 |
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 2 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Saline Lake Microbial Communities From Various Lakes In Antarctica |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | aquatic biome → saline lake → saline water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
Location Information | ||||||||
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Location | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | N/A | Depth (m) | 16 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003151 | Metagenome | 504 | Y |
F007072 | Metagenome | 358 | Y |
F008481 | Metagenome | 332 | Y |
F010230 | Metagenome | 306 | Y |
F014583 | Metagenome | 261 | N |
F025662 | Metagenome | 200 | Y |
F026204 | Metagenome | 198 | Y |
F029588 | Metagenome / Metatranscriptome | 188 | Y |
F031722 | Metagenome | 181 | N |
F035203 | Metagenome | 172 | N |
F042665 | Metagenome | 157 | N |
F050310 | Metagenome | 145 | Y |
F052986 | Metagenome | 141 | Y |
F054555 | Metagenome | 139 | Y |
F058677 | Metagenome | 134 | N |
F060609 | Metagenome / Metatranscriptome | 132 | Y |
F063346 | Metagenome | 129 | N |
F064414 | Metagenome | 128 | Y |
F075727 | Metagenome | 118 | Y |
F077964 | Metagenome | 117 | Y |
F078009 | Metagenome | 117 | Y |
F081868 | Metagenome | 114 | Y |
F088315 | Metagenome | 109 | N |
F098573 | Metagenome / Metatranscriptome | 103 | Y |
F102576 | Metagenome | 101 | Y |
F103103 | Metagenome | 101 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0222677_1000470 | Not Available | 15228 | Open in IMG/M |
Ga0222677_1005050 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2729 | Open in IMG/M |
Ga0222677_1006627 | All Organisms → Viruses → Predicted Viral | 2285 | Open in IMG/M |
Ga0222677_1008523 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae | 1918 | Open in IMG/M |
Ga0222677_1010408 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 1678 | Open in IMG/M |
Ga0222677_1010648 | All Organisms → cellular organisms → Bacteria | 1655 | Open in IMG/M |
Ga0222677_1011853 | Not Available | 1539 | Open in IMG/M |
Ga0222677_1012052 | Not Available | 1524 | Open in IMG/M |
Ga0222677_1013100 | Not Available | 1442 | Open in IMG/M |
Ga0222677_1013989 | Not Available | 1378 | Open in IMG/M |
Ga0222677_1016108 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1251 | Open in IMG/M |
Ga0222677_1017353 | Not Available | 1189 | Open in IMG/M |
Ga0222677_1017941 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 1161 | Open in IMG/M |
Ga0222677_1018055 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales | 1156 | Open in IMG/M |
Ga0222677_1018959 | All Organisms → Viruses → Predicted Viral | 1119 | Open in IMG/M |
Ga0222677_1026796 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales | 887 | Open in IMG/M |
Ga0222677_1027063 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Llyrvirus → Synechococcus virus SSKS1 | 881 | Open in IMG/M |
Ga0222677_1028022 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 862 | Open in IMG/M |
Ga0222677_1028174 | Not Available | 859 | Open in IMG/M |
Ga0222677_1036953 | Not Available | 716 | Open in IMG/M |
Ga0222677_1040904 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 672 | Open in IMG/M |
Ga0222677_1041199 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales | 670 | Open in IMG/M |
Ga0222677_1044870 | Not Available | 634 | Open in IMG/M |
Ga0222677_1046553 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 619 | Open in IMG/M |
Ga0222677_1049716 | Not Available | 594 | Open in IMG/M |
Ga0222677_1052503 | Not Available | 573 | Open in IMG/M |
Ga0222677_1056080 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp. | 549 | Open in IMG/M |
Ga0222677_1057543 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 541 | Open in IMG/M |
Ga0222677_1061240 | Not Available | 519 | Open in IMG/M |
Ga0222677_1061256 | Not Available | 519 | Open in IMG/M |
Ga0222677_1062881 | Not Available | 511 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0222677_1000470 | Ga0222677_100047019 | F081868 | MTDKQKTKKLPLAKGNSYGVSTAIWNNTNKAGTKYQSISLSASTKQTDGSYKNRTIFFPSDLENLIAALTELKANADAEGIITGFVEKK |
Ga0222677_1005050 | Ga0222677_10050507 | F088315 | MARGKLYMPSDTDRIFVERAVMAGTPIEKIAGCLNLHDDTLRKHFRYEIMTGRERLKGDAIRVLVDSLTDNSLDAAKFVLGRVAGWTEKSVVDNTSSDKSMTPTRIVIEAAKSDDQHDD |
Ga0222677_1006627 | Ga0222677_10066271 | F007072 | MELSKIQKKGQLSLGDAPTVVLLVGLVFLVMATIAFVGEKYGNSMVAQQTVTATCNTTSGIYTGCGAAYNVTQDLQTEIGNNTSIAGIVLTISLVGIVLTILIG |
Ga0222677_1008523 | Ga0222677_10085231 | F063346 | SDPPRLSEPTKGRRALSTARDDGQERLPHSTFDVERSMFDVQIVASEVTTKASYHVEIT |
Ga0222677_1010408 | Ga0222677_10104082 | F064414 | MGFGEIADKMPFVGGSGGGIASDAMYSIIGITILLLCGFALWWFLKKRKTWNIKVEFKIPRNIKKVKTKAGLIKIIGTLNKEWGKGFYDAVKGSVFIKRKGKKPVAMKPFDVKQYLSTGNILTVVQIGIEDYRPIRDESYIELKDVNGNEGALVQAVIDTSESKSWKNTFERESKMTYSIKNWIAEHGALVAMGLVLLMNLIGFSIVIGRMPK |
Ga0222677_1010648 | Ga0222677_10106481 | F063346 | MYSTIYNKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFDVQIVASEITTKPSYHVE |
Ga0222677_1011853 | Ga0222677_10118532 | F029588 | MAKKVDYSFWIGLSKTVKNSAYLLVPFAIALLSGIPNEYAWLAGPIVYMLKNYAQNR |
Ga0222677_1012052 | Ga0222677_10120522 | F077964 | MKTKRLLIVFSLILASFILMLYSTYAFAQTAESKSSPPTIQKIAPNSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPVAQKTALKKLYKTVLAMLKQMDLSK |
Ga0222677_1013100 | Ga0222677_10131001 | F075727 | FIIAMLLFSGTLAMFVLMIGSLASDYDNTDVVDAEFSAKFDKFSEDTDRAGEMWESATSEGGLSLVGTADLLFFSTFRVISLVFSSVVAAGQQMAGFGEFFGIPSEISSIFMVLIFTILTVSIVFIIISSIRSGKEL |
Ga0222677_1013100 | Ga0222677_10131004 | F007072 | MELSKLGKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYGNSIAAQQTLTATCNNTLNGGTGTVYSGCGSAYNTTVDLQTEIGNNTSIAGIVLTISLVGIVLTILIGVFVGVRGGTAEDPSRP |
Ga0222677_1013989 | Ga0222677_10139893 | F058677 | MNQINAEELFQIIGEQLMTIRKQNQEIMRLQTEVTKLKPKEEVKKNGQRNDK |
Ga0222677_1016108 | Ga0222677_10161082 | F077964 | MKKLIVLAVAILFLLSPVMAFCQTAESKISPQTIQKIAPNSYYYNYNITEIQKEPEGGGEAETFYQYNYVRIQGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLP |
Ga0222677_1017353 | Ga0222677_10173533 | F078009 | MTREKIKLTQTQLDRLKGLDADTDWLSEEIRRAEYVGLDVAELKDRFEKMSQIRSRMIEEYSK |
Ga0222677_1017941 | Ga0222677_10179413 | F010230 | VPLLVLINGNELRLLQLSQVWLKLVPLLVLINGNELRLLQLLQVEKKLVPLLVSINGNELRLLQLYQVEPKLVPLLVSINANELRLLQLYQVKPKLVPLLVSINGNEARLLQFRQV |
Ga0222677_1018055 | Ga0222677_10180552 | F063346 | MYSTIYNKDKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKPSYHVEITYTGQEL |
Ga0222677_1018959 | Ga0222677_10189591 | F054555 | MSCHSSVRDFVVGIDYDSIEEDKGHMTLRRKVSLDELIEEIKSILLEGSHYPQFPPEANPTITYAWDLNNQEDGDCYHEIMKELEKDNRKEVS |
Ga0222677_1026796 | Ga0222677_10267961 | F026204 | MQDSTLPLTDAPCALAAHGLATTYQRLWVAVVAGQVPGVRVGKRWHVREADLPIIAKTLKRGVSS |
Ga0222677_1027063 | Ga0222677_10270631 | F010230 | LLVSINGNELRLVQSRQVELKLMPLLVLINGNEVRLVQLYQVKAKLVPLLVSINGNELRLLHSRQVESKLVPLLVSINGNELRLVQFCQVEVKLVPSLVSINGNELRLLQFRQVKLKIVPLLVLINGNEVRLVQSHQVWLK |
Ga0222677_1028022 | Ga0222677_10280221 | F025662 | AKLIKAADVIKKGQAVRLTGGATPGDPIKVEFKGLGRLRGTLYPVRWKGV |
Ga0222677_1028174 | Ga0222677_10281741 | F042665 | MTPPKLSFATLILLSSVVTVVVTLGVMPLLALTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK |
Ga0222677_1036953 | Ga0222677_10369531 | F031722 | TQKVTKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGTRYTYPPKMKDGEGTTWKKEYPAKFSPILWDADFIDTLASAIHTQRIAMGDLKP |
Ga0222677_1040904 | Ga0222677_10409042 | F063346 | LSEPTKGRRALSTARDGGQERLPHSTFLPRETFFLFHWGDVERSMFDVQIVASEITTKPSYHVEITYTGQEF |
Ga0222677_1041199 | Ga0222677_10411991 | F014583 | MTTRDTRRNFLRLLDQTWPGVRSEFVAAMRQARAGVDMKALEAAIARGDVD |
Ga0222677_1044870 | Ga0222677_10448702 | F060609 | MNELEKSESVSVSRREFCKKAIKRSSVAAAVGVAGYLAYRKPAVRSFFGAGDAYAANTGAGSFSLKGDSN |
Ga0222677_1046553 | Ga0222677_10465532 | F003151 | PGDRVTHKPTGEEWTLAQVYGPYVVPAGPTPWTFGLAIDCTTTEELEACTRACDAVVL |
Ga0222677_1049716 | Ga0222677_10497162 | F054555 | MAALVMNCPSRVGDFVVGIDYDSMEEDKGHMTLRRKVPITELIEEIKEIMSKGSYYPQFPASANPSITYAWDLGNNDDGDCYHEIMSELDKDNRKEVIY |
Ga0222677_1052503 | Ga0222677_10525032 | F050310 | KMAQDMQGFIIGIVIVGVTLVIGIYVAATIAGTMVDGSSAQNASNSLVTALAGGSAWITILVVVGFAVIVLGMLSEGLGKAAGGMSGPVY |
Ga0222677_1054050 | Ga0222677_10540501 | F098573 | SYRMTGVSQALGMDTKQAGTWIALETEQPHAIQPRALWGLVQWLGQLSPAQLNLALGVDPPEYILEDEKHVKECGQKAYVPMIYAPKEALIWWVDYLHSASEDAIRNSLERFKAISDCLSHIVGATVDGWEGAQNALRAALPGIALEECHFHALLKLGKHLATYRRQRKQAGKPVSDTEEANIREAF |
Ga0222677_1056080 | Ga0222677_10560801 | F052986 | TMIEHALVRYGYGTLIQVRKMDTQDFLDAVEYQEITSAIEQYRMEQAHRER |
Ga0222677_1057543 | Ga0222677_10575431 | F102576 | MNDLLMLEKYFPEGNLEGGIDLANRLGWGISVQMAGDGYVVSSGDEPILRAEHKDALQSFIYGLGLAYAILPEKVFISLEKALKDL |
Ga0222677_1059117 | Ga0222677_10591171 | F035203 | NGVDNTISRQEQIWIDHEGGGTRSGVLSPRIGNRTSAVSAGTTVYFQLLIDNNSSNDTWTMLFPDSCTFQITETLDNDGGNDLNLNTGDIQADSAIFNSLNIQAGSSAGKAVIGRTQIGNDAFSNMMALSINGNVGATNYGFAQIANNQTIMNAQSTSTYNSFRVQNQEIASINDVG |
Ga0222677_1061240 | Ga0222677_10612401 | F031722 | HQMDETATTQTPTQKATKPRFYHEQAAAEKLGLSKETLRHWRVGYTVKSKGKRYTYPPKMKDGDGTTWKKEYPAKFSPILWDADFIDTLASALHTQRIVMGDLKP |
Ga0222677_1061256 | Ga0222677_10612562 | F103103 | RATRPIRGGVAPCLRLKSDKPGVPDGFVCGFHPIYEYGGFLFEVHRYHGPMPLRRSDLDPRKNTPKGFWDMWERFKVLSDEAKAAFLYEEALHVQKG |
Ga0222677_1062881 | Ga0222677_10628811 | F008481 | MDIEVKIDADCVSTEYETILFVKSLMDYKFVERLQFIKSTYRFARADFIILNTENIKSIIVECKSFKQIPSFLNKSKVDALLKHYKDPFIVIKHETAYYWLRVNAIDWSLLPIINEELAYEVSGCLSNDYDEL |
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