 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022854 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0114820 | Gp0255728 | Ga0222636 |
| Sample Name | Saline water microbial communities from Ace Lake, Antarctica - #141 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 189382169 |
| Sequencing Scaffolds | 23 |
| Novel Protein Genes | 24 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AB-164-P05 | 1 |
| Not Available | 17 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → saline lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Hypersaline (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Antarctica: Ace Lake | |||||||
| Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | N/A | Depth (m) | 15 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010230 | Metagenome | 306 | Y |
| F026446 | Metagenome / Metatranscriptome | 198 | Y |
| F039448 | Metagenome / Metatranscriptome | 163 | Y |
| F039470 | Metagenome / Metatranscriptome | 163 | Y |
| F043706 | Metagenome | 155 | Y |
| F057908 | Metagenome | 135 | Y |
| F060609 | Metagenome / Metatranscriptome | 132 | Y |
| F065402 | Metagenome | 127 | Y |
| F069661 | Metagenome | 123 | N |
| F071374 | Metagenome / Metatranscriptome | 122 | Y |
| F075591 | Metagenome / Metatranscriptome | 118 | Y |
| F077964 | Metagenome | 117 | Y |
| F078142 | Metagenome / Metatranscriptome | 116 | Y |
| F081868 | Metagenome | 114 | Y |
| F083597 | Metagenome / Metatranscriptome | 112 | N |
| F083696 | Metagenome | 112 | Y |
| F089824 | Metagenome | 108 | N |
| F092080 | Metagenome | 107 | Y |
| F094519 | Metagenome | 106 | Y |
| F098516 | Metagenome / Metatranscriptome | 103 | Y |
| F103996 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0222636_1001829 | All Organisms → cellular organisms → Bacteria | 7645 | Open in IMG/M |
| Ga0222636_1002031 | All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Atribacteria bacterium SCGC AB-164-P05 | 7033 | Open in IMG/M |
| Ga0222636_1011608 | Not Available | 2099 | Open in IMG/M |
| Ga0222636_1012121 | Not Available | 2041 | Open in IMG/M |
| Ga0222636_1014399 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 1819 | Open in IMG/M |
| Ga0222636_1019387 | Not Available | 1478 | Open in IMG/M |
| Ga0222636_1020676 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 1413 | Open in IMG/M |
| Ga0222636_1021723 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 | 1365 | Open in IMG/M |
| Ga0222636_1022658 | Not Available | 1326 | Open in IMG/M |
| Ga0222636_1023826 | Not Available | 1279 | Open in IMG/M |
| Ga0222636_1026074 | Not Available | 1201 | Open in IMG/M |
| Ga0222636_1030050 | Not Available | 1084 | Open in IMG/M |
| Ga0222636_1041545 | Not Available | 859 | Open in IMG/M |
| Ga0222636_1044528 | Not Available | 818 | Open in IMG/M |
| Ga0222636_1048404 | All Organisms → cellular organisms → Bacteria | 770 | Open in IMG/M |
| Ga0222636_1049184 | Not Available | 761 | Open in IMG/M |
| Ga0222636_1053502 | Not Available | 717 | Open in IMG/M |
| Ga0222636_1053514 | Not Available | 716 | Open in IMG/M |
| Ga0222636_1076541 | Not Available | 557 | Open in IMG/M |
| Ga0222636_1080239 | Not Available | 539 | Open in IMG/M |
| Ga0222636_1082530 | Not Available | 528 | Open in IMG/M |
| Ga0222636_1084244 | Not Available | 521 | Open in IMG/M |
| Ga0222636_1086529 | Not Available | 511 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0222636_1001829 | Ga0222636_10018296 | F083597 | MKQEFVNFKIFIWAIAIILGLFGISFGMIANAQLKADGAYHSIYQIRTDIEIIKTDLNWIKDKI |
| Ga0222636_1002031 | Ga0222636_10020313 | F026446 | MKVTGETFSFIKEEKEPKRKDVINIKLAGKRTVTRQNSGELYTKKHRRGNS |
| Ga0222636_1011608 | Ga0222636_10116083 | F071374 | MDYKNATEWLKGNRSMTNLIPRDPFETWQVRIAQADAAMTQQAYWIVKAEAEKLVKPAKHPK |
| Ga0222636_1012121 | Ga0222636_10121215 | F077964 | AFAQTAESKSSPPTIQKISKTSYYYNYNITEVQKEPEGGGEAETFYQYNYVKIKGKPTKRKVLDAIEAAESSTVTAEVEAVATERSTAKTQLADIAALSYAQVDNYVDNTFGNLPVAQKTALKKLYKTVLAMLKQMDLSK |
| Ga0222636_1012128 | Ga0222636_10121283 | F103996 | MLDFLKGKKTYIVVAVGVIVNGLFAMGVIPVEYLGMANTILGFLGLGAIRAGVAKK |
| Ga0222636_1014399 | Ga0222636_10143993 | F057908 | MEIRTVLVRKDGVKHVFIPKKSKIQGGEQVLITNNLNLINKFKREENK |
| Ga0222636_1019387 | Ga0222636_10193871 | F039448 | AAVVVRAWQSLESDGSWNENPDRKFPMIDVRCSPPGHDDNESTLQVECRIMMGTNTDDDKSHAFISNMYEDVQDVCDTLFSQYKTGVFTGEELAYFLARVLAETSSDAFQFGGLTFGDGLAPADDGGINMIGITMIVHYGRSDF |
| Ga0222636_1020676 | Ga0222636_10206762 | F075591 | LGHAVESPETRRLLARGAPVAIGGVYLWPMSLYAQDWFDRVGCHLDGNKQQTYALAYAMAHGRNEGEPLAMECREAEKTVKRWGKSLKCTFGELNVAVSQVLQQDEDAEQPPSETGGMTMGDFSAFLASACGGDPDFWERRCAAGYTHAVLDALVRQNSAEGHKTMADPRIKAERALGWKIECIKKSRKEVE |
| Ga0222636_1021723 | Ga0222636_10217232 | F010230 | MPLLVSINANEVRLVQSRQVWVKLVPLLVSINGNELRLVQLYQVVSKLVPLLVSINGNELRLLQFRQVEPKLVPLLVSINGNELRLVQLYQVKPKLVPLLVSINANEVRLLQLFQVWLKLVPLLVSINGNEVRLLQLFQVKLKLVPLLVLINGNELRLVQSRQVWLKLVPLLVSINANELRLLQLYQVEPK |
| Ga0222636_1022658 | Ga0222636_10226581 | F069661 | MAKLKISKEKYNNFIKLATGEIVKKQEEIKQLQGFIEKYREDYEEGEE |
| Ga0222636_1023826 | Ga0222636_10238262 | F098516 | MTISKATSFGALTDHFAILETVHDVGTLADIMVLVASSKVPRAQSRADAQDENEDIVASAFSGNSAEEIAEVSCTYALKSGTLDLSDLVIGELAVQIFAESLALTTANGAWPQITVSGYLGLETITAPTSYTNQFTLPAISVIGMKQAQVLGFTVTTGRLTGSGITFNCSMAEQLDGVGEPAAHGVSGGTGEVTADFVRVDDAPAWELAAVLTDSPFLAEVTADPGEDQGQAAWHTAAGAASFNLARLAS |
| Ga0222636_1026074 | Ga0222636_10260742 | F083597 | MKQEFVNWKIFIWAIAIILGLFSISFGMIASAQLKADGAYQSIYQIKTDIEVIKNDVNWIKNNI |
| Ga0222636_1030050 | Ga0222636_10300502 | F083597 | MKQEFVSWKIFIWAIAIILGLFSISFGMIASAQMKADGAYQSIYQIKTDIEVIKTDVNWIKNNI |
| Ga0222636_1041545 | Ga0222636_10415451 | F094519 | MSNLKTPEQLTSGVTMVGTSSWGSQTSGIGSVMGSTWSEKIVFDAQPDRVLSKYFLEFNDLMGNNDVTIVIPKIGDVSLMGGRTGSAEGIARTMTKFDSADNITVSLTSADVKLGGCSISFETASATRVSIIEMAHKQLVRQYLNTIETDANEILEGATISST |
| Ga0222636_1044528 | Ga0222636_10445283 | F065402 | MKKIIVGFQVYQDFKKRIIEAGKKYKIQGISNPLNISQFCRIAVAKLVSDIEEKGE |
| Ga0222636_1048404 | Ga0222636_10484042 | F089824 | MFNNLTPEEATIAYIIRAKKSFSDTITQYSIADEYIIRRGIEISPRKVRRIIEGLIKKGYPVISTPHQPNPGYCWYTYDSERVECINRLRRKAAKIFIRARRINRNCMAVRDKREKIEQEEMF |
| Ga0222636_1049184 | Ga0222636_10491841 | F092080 | MQDKRVTIRIPFEIWKALRELQTVGKISSIQQAAVTGMDKLIESLKKGVKENRKEAAKNRVLNVLVKERPLGNWED |
| Ga0222636_1053502 | Ga0222636_10535022 | F083696 | ALKYNLSVVVVSKLGNIDGAYDSKAKLLLPNFETTWQGALFEGHNKKRHPCPSLNY |
| Ga0222636_1053514 | Ga0222636_10535141 | F043706 | ALLVNLLFMALDTGQPSVWLLILCAVAIIFAGGAENRGSGL |
| Ga0222636_1076541 | Ga0222636_10765411 | F010230 | MPLLVLINGNELRLVQLYQVEPKLVPLLVSINGNELRLVQFCQVWKKLVPLLVFINGNELRLLQLLQVRVKLVPLLVFINGNELRLLQLLQVWKKIVPLLVLINGNELRLLQLPQVEPKLVPLLV |
| Ga0222636_1080239 | Ga0222636_10802392 | F060609 | MDYRPFRLKGAMERKKMRESLKPTTDSLTRREFCSKAIKRSSVVAAAGVSGYLVYKKPAIRSFFGASDAYAATTGPGKFSLKGDSN |
| Ga0222636_1082530 | Ga0222636_10825301 | F081868 | MKKKTENNKPVVSANSYGISTAIWDNTNKAGKEYQSISLNGSTKLPDGTYKNRTIFFPSDLENLINSLTELKEKADEAG |
| Ga0222636_1084244 | Ga0222636_10842441 | F078142 | MSFETEAFNSIYASITIARCQIRIGRTVIAKALCAGIGTLRENTDEGQLGSIDANVRLLATDEPDGEIKTGTVIEILQNGQDEKTGWVK |
| Ga0222636_1086529 | Ga0222636_10865292 | F039470 | MAQTEFVLDQGIGELILLWSGAAATKMSKIVGLDKATVITAAVGSTFAAPGSTSAHHTEHGLEIAAIDTVAQDTTNTAGDTILFDHVLTATDTENLAGIQTCNEDGDKAYHECGFNAVLAMEN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |