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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022831 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131983 | Gp0256445 | Ga0224517 |
| Sample Name | Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T100 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Restricted |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Dataset Contents | |
|---|---|
| Total Genome Size | 63875413 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 17 |
| Associated Families | 16 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina | 1 |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group | 1 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium 311 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Peatland Microbial Communities From Stordalen Mire, Sweden |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0466 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008314 | Metagenome / Metatranscriptome | 335 | Y |
| F013964 | Metagenome | 267 | Y |
| F027066 | Metagenome | 196 | Y |
| F033911 | Metagenome / Metatranscriptome | 176 | Y |
| F035155 | Metagenome | 172 | Y |
| F037489 | Metagenome / Metatranscriptome | 168 | Y |
| F037997 | Metagenome / Metatranscriptome | 167 | Y |
| F051240 | Metagenome / Metatranscriptome | 144 | Y |
| F056181 | Metagenome | 138 | N |
| F061382 | Metagenome / Metatranscriptome | 132 | N |
| F080676 | Metagenome | 115 | Y |
| F092956 | Metagenome | 107 | Y |
| F096438 | Metagenome / Metatranscriptome | 104 | Y |
| F102334 | Metagenome | 101 | N |
| F104262 | Metagenome | 100 | Y |
| F104263 | Metagenome / Metatranscriptome | 100 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0224517_1000047 | All Organisms → cellular organisms → Archaea | 26682 | Open in IMG/M |
| Ga0224517_1000731 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina | 1888 | Open in IMG/M |
| Ga0224517_1001413 | Not Available | 1401 | Open in IMG/M |
| Ga0224517_1003641 | Not Available | 973 | Open in IMG/M |
| Ga0224517_1004056 | Not Available | 934 | Open in IMG/M |
| Ga0224517_1005668 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 827 | Open in IMG/M |
| Ga0224517_1007615 | Not Available | 744 | Open in IMG/M |
| Ga0224517_1008310 | Not Available | 720 | Open in IMG/M |
| Ga0224517_1008616 | All Organisms → cellular organisms → Bacteria → Terrabacteria group | 711 | Open in IMG/M |
| Ga0224517_1009246 | Not Available | 695 | Open in IMG/M |
| Ga0224517_1009700 | All Organisms → cellular organisms → Bacteria | 684 | Open in IMG/M |
| Ga0224517_1016773 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 563 | Open in IMG/M |
| Ga0224517_1018472 | Not Available | 544 | Open in IMG/M |
| Ga0224517_1021615 | Not Available | 514 | Open in IMG/M |
| Ga0224517_1021735 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Flammeovirgaceae → unclassified Flammeovirgaceae → Flammeovirgaceae bacterium 311 | 513 | Open in IMG/M |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0224517_1000047 | Ga0224517_10000474 | F056181 | MEATDDLTSYRLRKRIHELEAENTRYQKNQNLARKWEFRITGVVLLAIGAVITLVAYPSYNGSPSASVLMMVGIGALFVGAVTVFLNTERFISQKVAEDLNLSSVIVVDDLLRDLRVKNRGVYLPSSMTGTNVKVFIPLRREYEVPAKVHLTEDRAFLIDLANPAQEVVLLKPLGYHLFAHTTRDLKVDWRDAPIETEGAEEPQQDREPQAGNTLTEKLQDVLVKGLELADKVDVSQNDGELSVRLHNTPYTGTCHSIGEEAPQVCEQIGCPLCSMIACIYTEYADTASVLEEARNEGSDIIIRCSELARPQRDRLGL |
| Ga0224517_1000731 | Ga0224517_10007312 | F027066 | LKIYGLVGLHDMKGGKTRFQQKFTEDMFLNALSIDSIKSTATIMSLVGCSRSTAKNMLYKLVNEGKVNKIEVEGEGYGWQKAKGD |
| Ga0224517_1001413 | Ga0224517_10014131 | F056181 | CNALRRPDMEATDDLTSYRLRKRIHELEAENTRYQTNQNLARKWEFRITGVILLAIGAAITLLAYYSYNVSPIANVLLMVGIGALFVGAVTVFLNTERFISQKVAEDLNLSSVIVVDDLLRDIRVKNRGVYLPSSTTGTNVKVFIPLRREYEVPAKAHLTEDRAFLIDLANPAQEGVLLKPLGYHLFAHTTRDLKVDWRDAEAETEGAEDFQQDREQQDTLADKLQAVLVKGLELADKVVVSQSDGELNVRLHNTPYIGTCRSIGEEAPQVCEQIGCPLCSMIACIYTEYADTASVLEEARSEDNDIIIRCSGLAQS |
| Ga0224517_1003641 | Ga0224517_10036411 | F035155 | GFTGDLAADVGTSLGGMRAHPERRFEDSVEDRSRAQREQELAAALSRESELADGFADARLVLLGDLGHVELRRLCGRPC |
| Ga0224517_1004056 | Ga0224517_10040561 | F033911 | MRVVSFLIVLMFMAAQAILAQTQKSFPTDDEINLLLTQTERAIQQYKPLMDQEQVQMGKDGAEAAAKDRQVLEGLETALKAFRSKPQAFNGPLGFIFIGMLDDADRNAVLCGSGASTQATLQLMDGNVTKADSLVHLTQGCQDVSALIYTVSENANSLYQRYVEDEEQLANQGAEAAEKCMAILKKNGVQ |
| Ga0224517_1005174 | Ga0224517_10051742 | F104263 | MRSPHSYVGLALASALLLGCTPSVEIDAPDIEITQPNLQFPAAPAGAVAGTQAIGSFKLSTAKLGATNNPDAGTLKHIERLLITQVVLRANTGIEDFSFLDQLTVNAANVALATESSPGRPVVQIVDYEAPYGVPIGAVLSLPLSPPVDMLPVWGRTSLYLTVTATGNLPKVAWSADVVFSLSLKMTQ |
| Ga0224517_1005668 | Ga0224517_10056681 | F102334 | AMDGPVVELIGHPTTQPRVDSRSAIEAAVDQAVLPHQLHEIDQVIELAQLCELLVEKDARVALLERGLADWRERARLEIEARAAADRLAFERERDLIGVIHQQISAIESAEESTREAFAQADELRARLDEQMTMVEDAEQNTQSALARMHELQARIDELDDRLHQRARHWWSRRAV |
| Ga0224517_1007615 | Ga0224517_10076152 | F051240 | HVLEKYRDNPNLGNPVSPIKLIEPFMADDIWYCHGHEYDPSVQYIPHRLMWLWNHLPQKKLTPSNLKMNFITERYIMLVYLVQSRALINLQQKVKKEHEECKGIVFGHTHLPLFQRSPELLFLLNDGDMRHSATFTVEDEIEFRQLTWNPKQSRWSVIPIQKP |
| Ga0224517_1008310 | Ga0224517_10083102 | F092956 | MPSKVSRMHDSDDRMLARYQHLYKRALNVKALQLQKIQRAETRELCISALFKAVVICNNTLKEMDVKQ |
| Ga0224517_1008616 | Ga0224517_10086161 | F008314 | VRHHLEPSVGERRFECTVRLSSGEPPSRYHVHLSFAWDALLTYVAAYGAGADCDLYHDDEEAEDCPHHQLPPQPFVELEAEFILGDGGYELHDIAEVSAWVDTVQELLAKVFRDEDRPSVHVGIASLGTTTLVEKFTAEHSWLLDFERPPDFEGIAHQVQNALRLIPQLADRLPI |
| Ga0224517_1009246 | Ga0224517_10092462 | F013964 | MKELLVIPDYDPIDPKPYPGDIKPVYYTQKQVKELRAKNKNNPQALQFLKDMLE |
| Ga0224517_1009700 | Ga0224517_10097001 | F037489 | LVAEYEASGLSQVEFCRKQGLSLATLARYRKRQTQGSPAAGNRWVEVKESAGRPALGSPAGSGLAVALPSGRRIEIGRGFDAHTLAQLLGVLERI |
| Ga0224517_1014543 | Ga0224517_10145431 | F061382 | FCAVLMREPVPYEEACHLFGFDIPAAKPSAPKRIKRHLARGRTALFGREAEVRQLNQYDSVHRVILADGVTSFETAVYDPGPRWPEAWTSGAALASRRGGALLTGHPVQIGDLIQITGALPSGQIKAHCLIWDVDYDLVVFDIKKELRAWNGEAYFSVLNELHASPANLDVQTASNLDLAKVRDQKLIQYLSQEFAC |
| Ga0224517_1016773 | Ga0224517_10167731 | F037997 | MTRRKKQVYALRGTAVVGDQASEERFAEITSGRSRWQQGLVATCEDFLHEAKAEGKKSQTGLENESVGAMTEA |
| Ga0224517_1018472 | Ga0224517_10184722 | F096438 | SSASAIFLESTPTGNLTAAAGNVTLAGAQVSVAGDWPRNAPYTQTVSGNTVSVYVPAASAALVRVLQ |
| Ga0224517_1021615 | Ga0224517_10216152 | F104262 | DELKQVCKDANERVARQHYVISLLQPVTYVLMQPWLKGYHGQIHGLWMGMGGPSRLSLYGARCWIDGTLKKSLGH |
| Ga0224517_1021735 | Ga0224517_10217351 | F080676 | ILCTFIVSVSCDKERINENFQDETSIQNINGTWKVVSYEDFQKASVTVKNDVDSWNGMDVILTFANDSLYGQCTTNTISGKYTIAGRYISIDSYGGTKIGQPVWGNMFSNIVYLIRSFEINEHQLRFFYNNSENSVTLHHN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |