NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300022547

3300022547: Wilbur_combined assembly



Overview

Basic Information
IMG/M Taxon OID3300022547 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0111485 | Gp0147102 | Ga0212126
Sample NameWilbur_combined assembly
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size456199054
Sequencing Scaffolds26
Novel Protein Genes26
Associated Families21

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea10
Not Available7
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon3
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameBacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)39.0314Long. (o)-122.4323Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011196Metagenome / Metatranscriptome294Y
F014681Metagenome / Metatranscriptome261Y
F021710Metagenome217Y
F024682Metagenome / Metatranscriptome205Y
F025653Metagenome / Metatranscriptome200Y
F028081Metagenome / Metatranscriptome192Y
F030484Metagenome / Metatranscriptome185Y
F035541Metagenome / Metatranscriptome172Y
F036103Metagenome / Metatranscriptome170Y
F037495Metagenome168Y
F038920Metagenome / Metatranscriptome165Y
F055311Metagenome / Metatranscriptome139Y
F058721Metagenome / Metatranscriptome134Y
F060598Metagenome / Metatranscriptome132Y
F073072Metagenome120Y
F073077Metagenome120Y
F091298Metagenome / Metatranscriptome107Y
F096272Metagenome105Y
F098703Metagenome103Y
F100933Metagenome / Metatranscriptome102Y
F101433Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0212126_1000844All Organisms → cellular organisms → Archaea26196Open in IMG/M
Ga0212126_1001087Not Available22254Open in IMG/M
Ga0212126_1002468All Organisms → cellular organisms → Archaea12724Open in IMG/M
Ga0212126_1003131All Organisms → cellular organisms → Archaea10769Open in IMG/M
Ga0212126_1003244All Organisms → cellular organisms → Archaea10506Open in IMG/M
Ga0212126_1003752All Organisms → cellular organisms → Archaea9367Open in IMG/M
Ga0212126_1003887All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria9102Open in IMG/M
Ga0212126_1005115All Organisms → cellular organisms → Archaea7483Open in IMG/M
Ga0212126_1005947All Organisms → cellular organisms → Archaea6647Open in IMG/M
Ga0212126_1007780All Organisms → cellular organisms → Bacteria5423Open in IMG/M
Ga0212126_1012260All Organisms → cellular organisms → Archaea3845Open in IMG/M
Ga0212126_1018498All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2835Open in IMG/M
Ga0212126_1022460All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon2456Open in IMG/M
Ga0212126_1031973All Organisms → cellular organisms → Archaea1900Open in IMG/M
Ga0212126_1035440All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium1761Open in IMG/M
Ga0212126_1036597All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1721Open in IMG/M
Ga0212126_1036746Not Available1717Open in IMG/M
Ga0212126_1063230All Organisms → cellular organisms → Archaea1154Open in IMG/M
Ga0212126_1064312Not Available1140Open in IMG/M
Ga0212126_1068451All Organisms → cellular organisms → Bacteria1089Open in IMG/M
Ga0212126_1072091Not Available1049Open in IMG/M
Ga0212126_1079004All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon981Open in IMG/M
Ga0212126_1112192Not Available763Open in IMG/M
Ga0212126_1129830Not Available687Open in IMG/M
Ga0212126_1139463Not Available654Open in IMG/M
Ga0212126_1185957All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium536Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0212126_1000844Ga0212126_100084422F024682LSAEDELIAKLKQEIGKTVPSMFAAMAENMLESNRDVIINWLKENKDLVKQVIES
Ga0212126_1001087Ga0212126_10010876F025653MSDPIKYFETKLKAMNLAELQAYKKRLDERIQKMIMDTAPNEQIAPLILYRGILEHEIETRTKQR
Ga0212126_1002468Ga0212126_10024688F098703MVKKVHIIINLLSEASKKSDSQIEEKIRNEAKIPLCSNIEDVSVEDTEESYNNLKKHGISSNVARNLLDLYTE
Ga0212126_1003131Ga0212126_10031318F036103LKNWNNIIRILGIGTCSVGAFLMAFGEPIIGADHAGIATVADITGIGLIGTGNTSSFAGKKKEEQ
Ga0212126_1003244Ga0212126_10032448F058721MLRATLPCADPQCKDEMRLVFQNERFLGYRCLLKPNSHNFRYDIEHKRWEKIIIKTKPIIGYKESPYDIALDEEVAAETI
Ga0212126_1003752Ga0212126_10037521F028081MDQEEALQRLQKTRIENEQAYLKAKAFLDGFRARGQLSQNDSEFLFLLEFVIKGFKNHGNDIIKAFENQVRFNEAFNNMQAKVNDLEEEIKQLRITLDKMYHDR
Ga0212126_1003887Ga0212126_100388710F055311MTEDILDYWIRLIKTIFPENAWITSRFFKNDCLIDIDWKLEDDPENPNKRSKKIEIIIKAATLENYLDKNKKERELSDMMLKEFISEQYNRFSSDYEISTSQYVPKEKWLITSDVLNCRPSVDTPPNL
Ga0212126_1005115Ga0212126_10051152F038920LLTEIVTDEQLIDLYTTAGYLVAVDYPKEEVKLHTVDCMLADPISSVGVKPSKARANKTGEFWFSESREEANSKAEEIAKKRGYTYTVCPICNR
Ga0212126_1005947Ga0212126_100594713F096272MGEYFLSWMEDLKKLHCKPEVSIAEINDFILQHPKWAASIIRNAIGFEMYREFCLCCKNFDRCCEKLGAIKRETRLGCICNEFLNQEYSEANRPRLRAYFEEVAVLLNI
Ga0212126_1007780Ga0212126_10077803F101433MKRRVIFAAVVLVGLAAVAVGIARGDFETIHRFAAQI
Ga0212126_1012260Ga0212126_10122604F073077QWSLVEESGFVNRTLIIGSMPQVNADCVRWMQPFPDMEQYDLLIIDLASFPKDYPPTLFTNIGLLKRTARLFIRDNKEIFCIMEKPLKILFKQIPLNYSWIPFPQKLTVNPMILGRTVVVTDERFSEYMKNVDKWENELFWTDTTNCSFAPIAVNKSENAIAATITINDRGKIHFLPRTTRISRAKSIKLLMNLSNREEGQNEPSWLGSVEIPDSKRPQDQWNSSVPAEEYRKLFSVNHKNVIKAVQIMLEDMGIQTLQNAEFGLLGLKENIVVKVASAKGKIEAQNPKVNQLARFIEHQRRNEKIVFIANTYSGLPPNERANREHLDLSVKLFFETSNVVFLTTLSLYNLWKKVITFQISVKEASFLLHNEKGEI
Ga0212126_1018498Ga0212126_10184984F021710MRRDKPHSTLTEFRLCKEFGWTPKALARQPAKTVEAFVVIMNEMDRQTEEEMRKAKREVKQGVR
Ga0212126_1022460Ga0212126_10224606F014681MRSLKECIHGAVDLGVVLMVIVAFAGLMVIAYIIWTVRGQLTGPSAAANETLDAITGGFDDAVGLILVAITIFVLAIAISALLMLRGRS
Ga0212126_1031973Ga0212126_10319734F021710MKRGKPHPALMEFRLCKEFGWTPMSLARQPAKTVESFVVIMNEMDRQTEEEMRKAKQEARHVR
Ga0212126_1035440Ga0212126_10354403F011196MAADGLDPKREEFLRLARAAFERMFGSDGQNGLVTFTEREERACEITDELARWLMAEHLAQDSAGEAGVQRDCPLCGGPVQYASAEQAEQEVRELMTRRGKIEYRRAAVRCPRCRKIFFPAG
Ga0212126_1036597Ga0212126_10365973F073072MKKKAIITIILIEDPEAYKSKTNSDIEKEILEEIGPIPYAASVEKVTVIDFQKETKTRPT
Ga0212126_1036746Ga0212126_10367461F035541VKRLALIITLVAGLFLVGATAVFAATTDLNRIPITDTLEVGTMEWDLTWRYSDDFERGRKLSSRLFAALFDNFEFGMSWGISRRVHELGYNPYVRGAGPVEFSMKYKILDEYDGGFPVSLAVGAEGITGNYQRTGMDPTYYGVIGFHDVHIGGWWDWYVGIAHNPTGFDDDDNSIFGGFKYWINEDWQFNADYWGRNDNSDYVISGGVNYDWCNHLGFQGWVERDSITEDNVFVLQMIARADMRDLTAQVSDPE
Ga0212126_1063230Ga0212126_10632301F098703MVKKVHIIIDLLPEASKTSNSQIEEKIRNDAKIPWCSNIEQVSVEDTEASYMKLKKHGISSKVARNLVDLYTE
Ga0212126_1064312Ga0212126_10643123F030484MVDKKEEAIDEAISKMSQIKKAAGDFRENVAGLVKDVNIESTDWRFNVESHNEGVTIDIAIKLLITKKEEDPETSN
Ga0212126_1068451Ga0212126_10684511F060598VKGKIGNTGRILKAEELVLAYDLDARLWLAVRVYQGTKKLSKGLVEIVRELLHHRGQLKGLLRLFFDKGGYCGQIFRTLVDCPDVRFYTPAVRYSTNVKQWEQLKEADFDSEPFVFDKHADLPAKERPVYRLADTEMTINVREGRKVVGTVTLRAVVLHDPQGEKLAERWPVVMLTDDRQINARTLLNEYGDHWGQEFGHRIGRHDLYLDILPPGYVLKTWRDDQGELHREVEYDQTAFFLSAWLRCLVFNLMTRFAQAMGGEYTKMWAGTLLRKFIRRPATLYLVGKELHIVFDPFPGQEELQPLLDQLNAKRTALPWLNNLVVQFSIAQDEPLYPLTEPEKRNRLFGDG
Ga0212126_1072091Ga0212126_10720912F100933MEIKLEGNKLIIEAIVSSGVPSKSEKTLVVASTNGFVEVPGTNLKVSLNVVKPRR
Ga0212126_1079004Ga0212126_10790042F021710MRRGKPHPALMEFRLCKEFGWTPTSLARQPAKTVESFVVIMNEMDRQTEEEMRKTKRETRYRVH
Ga0212126_1112192Ga0212126_11121921F037495RTMNNTDDSASHEEQLATRPMDYSDLMAMTRPLVMTEDVLRSLRGDDVFRVGFGTSAEPADRRAEFALRIGEILCPGGECDVARESISASGKTGSNLKLKIHLGMS
Ga0212126_1129830Ga0212126_11298302F038920LLTEILTNEQLINLYTTPGYLVAVDYPKKEVTLHTVDCMLADPISSVGVKPSKARENKTGEFWFSESREEANSKAEEIAKKRGYTYTICPICNR
Ga0212126_1139463Ga0212126_11394631F025653MSDPIKYFETKMKAMNLAELQAYKKRLDESITQKIAATAPNEQIAPLILYRGILEHEIETRTKPR
Ga0212126_1185957Ga0212126_11859571F091298LWVASPGQALEHLSVGEPIQNMQITDLLDLDPLVVSRWLCGEDMRGIYQPIVVRHSALDGLDLEGRTFYEIVELVDCRIATAHFKYAYFYSSLLVEDCVFGGDFEGRGLQGDGRMVFHNTIFAGWADFSGISVRGRADLVDVSFPGGTNLLRILSNGSRALLGHEINFSRCRFRPVDI

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