Sample 3300022544

Overview

Basic Information
IMG/M Taxon OID	3300022544 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111485 \| Gp0127790 \| Ga0212120
Sample Name	Jinze_combined assembly
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	201359288
Sequencing Scaffolds	14
Novel Protein Genes	14
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	9
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → Euryarchaeota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)
Type	Environmental
Taxonomy	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Baoshan, Yunnan, China
Coordinates	Lat. (^o)	25.4413	Long. (^o)	98.46	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F013170	Metagenome	273	Y
F020112	Metagenome	226	Y
F025877	Metagenome	200	Y
F038537	Metagenome	165	Y
F064214	Metagenome	129	Y
F078228	Metagenome	116	Y
F079345	Metagenome / Metatranscriptome	116	Y
F103293	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F004454

Metagenome / Metatranscriptome

437

F013170

Metagenome

273

F020112

Metagenome

226

F025877

Metagenome

200

F038537

Metagenome

165

F064214

Metagenome

129

F078228

Metagenome

116

F079345

Metagenome / Metatranscriptome

116

F103293

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0212120_1001379	All Organisms → cellular organisms → Archaea	17828	Open in IMG/M
Ga0212120_1001417	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota	17399	Open in IMG/M
Ga0212120_1001727	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	14832	Open in IMG/M
Ga0212120_1002513	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	10960	Open in IMG/M
Ga0212120_1006875	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	4694	Open in IMG/M
Ga0212120_1011344	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	2948	Open in IMG/M
Ga0212120_1012238	All Organisms → cellular organisms → Archaea → Euryarchaeota	2728	Open in IMG/M
Ga0212120_1012506	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2660	Open in IMG/M
Ga0212120_1012765	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2608	Open in IMG/M
Ga0212120_1016437	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	2018	Open in IMG/M
Ga0212120_1017574	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1882	Open in IMG/M
Ga0212120_1022683	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1431	Open in IMG/M
Ga0212120_1032698	All Organisms → cellular organisms → Archaea	967	Open in IMG/M
Ga0212120_1042210	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	745	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0212120_1001379

All Organisms → cellular organisms → Archaea

17828

Open in IMG/M

Ga0212120_1001417

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota

17399

Open in IMG/M

Ga0212120_1001727

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

14832

Open in IMG/M

Ga0212120_1002513

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

10960

Open in IMG/M

Ga0212120_1006875

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

4694

Open in IMG/M

Ga0212120_1011344

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon

2948

Open in IMG/M

Ga0212120_1012238

All Organisms → cellular organisms → Archaea → Euryarchaeota

2728

Open in IMG/M

Ga0212120_1012506

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

2660

Open in IMG/M

Ga0212120_1012765

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

2608

Open in IMG/M

Ga0212120_1016437

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

2018

Open in IMG/M

Ga0212120_1017574

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1882

Open in IMG/M

Ga0212120_1022683

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

1431

Open in IMG/M

Ga0212120_1032698

All Organisms → cellular organisms → Archaea

967

Open in IMG/M

Ga0212120_1042210

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

745

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0212120_1001379	Ga0212120_100137916	F013170	MSVHLHTTITRKANEILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKVNEQTKLREALDLASISRRNLDSLLEIAIGNKTIEDFMKEQKAEAKNTIEILKSSINWKPPSNFKEFLIVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPIIVAFHTATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRKKEFGEFLEQQVENELAKVTPGLFKGTLMLVGPAFMSWAEKHLEEPISDLGNLLEDARIVLGVDEFPKEPKDFVKALLSAFVKMNWFKQAKVLIEKDENVLELVFQAALPSITRISTAALSVMLATRGWKTLNYTTEHTTVNMTIQYVGAEDQSLLDQLAELSLFQVIGKQFLDVIPIPRDLFNSFALKVYESDKRKFEEIYRATGTRISNAIRMLARNDSERIKRLAKSFILKNINATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEIITTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYRLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEA
Ga0212120_1001417	Ga0212120_100141711	F079345	MLSKALNLELEDLSVLQRKLLLELVHRKHPHYWSKITGHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIHV
Ga0212120_1001727	Ga0212120_100172727	F103293	MQLETLKELPRPYEIYEFVPCHPADFKIVRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPTFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPKAHFSVMWI
Ga0212120_1002513	Ga0212120_100251310	F038537	MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETAQDG
Ga0212120_1006875	Ga0212120_10068758	F079345	MLSKALNLELEGLSVLQRKLLLELLHRRYPQYWGKFTSHEYSWQSRKEALEEFLQNHQTELVEEFTKSGLHGNGWKTTRKGGIHV
Ga0212120_1011344	Ga0212120_10113442	F103293	MELQALRELSRPYEIYEFVPCHPVDFKVMRYEVGRITIAPRWPGAPPQKTVIAVRLHVDPTTKPTFPYYWDITPSRLVHQLAAMLAADFKPGRTIRIHRDIPGPKAHFTVQWL
Ga0212120_1012238	Ga0212120_10122382	F078228	MAKKFTMSMPDDMYAALEKERQRRKLGTIQELIRFIISDYFKEKTT
Ga0212120_1012506	Ga0212120_10125061	F079345	MLSKALNLELEGLSVLQRKLLLELLHRRYPHYWGKFTSHEYSWQSRKEALKEFLQNHQTELVEEFAKSGLHGNGWKTAR
Ga0212120_1012765	Ga0212120_10127652	F020112	MEKEAPKTRIKGELQMISRAFRKCVELVEEMLGRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEKEVKTEKI
Ga0212120_1016437	Ga0212120_10164373	F025877	MPGLDETENTFRYRVQNPDKFDRFRVKEITHGVKITLGRVKGTSRWEIQNYIFDKKLFRTREQVQKWLEKHLKSEVKTLLDFNAWNEHRKRLLQVYLEISKIA
Ga0212120_1017574	Ga0212120_10175743	F064214	MSEKGDLKVLAKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE
Ga0212120_1022683	Ga0212120_10226833	F079345	MLSKALNLELEGLSVLQRKLLLQLLHRRYPHYWDKFTSHEYTWQSRKEALEEFLQNHQTELVKEFVRAGLHGNGWKTTRRSGARVQG
Ga0212120_1032698	Ga0212120_10326982	F004454	LSRDFRRTVVEVREDLHREVRKLALLNDLRIYQLVNAIIEDYLRDGERVKALIKRLRLQFPPPP
Ga0212120_1042210	Ga0212120_10422102	F004454	MRQVYRRTVVEVREDLHREIRKLALLNDLRIYVLANAIIEEFLKDEERVRALVKRLRLQHLGA

Scaffold ID

Protein ID

Family

Sequence

Ga0212120_1001379

Ga0212120_100137916

F013170

MSVHLHTTITRKANEILEELAKTYGTKSRALEKALETLLRVDKVGSCDDCAIKAKVNEQTKLREALDLASISRRNLDSLLEIAIGNKTIEDFMKEQKAEAKNTIEILKSSINWKPPSNFKEFLIVLEEIRNLTNMYDIPSYSEIDNIAILRPKVFKRLPIIVAFHTATILEGIGVYFDIRVMGEDIAVKMVRPEVYPLRKKEFGEFLEQQVENELAKVTPGLFKGTLMLVGPAFMSWAEKHLEEPISDLGNLLEDARIVLGVDEFPKEPKDFVKALLSAFVKMNWFKQAKVLIEKDENVLELVFQAALPSITRISTAALSVMLATRGWKTLNYTTEHTTVNMTIQYVGAEDQSLLDQLAELSLFQVIGKQFLDVIPIPRDLFNSFALKVYESDKRKFEEIYRATGTRISNAIRMLARNDSERIKRLAKSFILKNINATQPDAEVRFVDDEHFTIIFKRIDPLVMNSQRVLIESMFRELGYEIITTTFQNLLSFKLKLLEKPVLEPLPRKKLMQTLIEGMSCNSVEEAFAIEKEQLDELFPDDYPWTIREVGERITDMYRELGIEVEIEYFEGGFTLKYKSCPYYRLVKTGQKTWLCSLRKKTIEYIISRVSHGKKGKIKIIKSLLQNEHPCEYAIFLTGFLEKEEKAEA

Ga0212120_1001417

Ga0212120_100141711

F079345

MLSKALNLELEDLSVLQRKLLLELVHRKHPHYWSKITGHEYSWQSRKEALEEFLQNHQTELVEEFAKSGLHGNGWKTTRKGGIHV

Ga0212120_1001727

Ga0212120_100172727

F103293

MQLETLKELPRPYEIYEFVPCHPADFKIVRYEIGKITITPKWPGAPTTKTIPAIRLHVDPATKPTFPHYWDITPTRLVHQLAAMLTAQFEPGKTIRIHRDIPGPKAHFSVMWI

Ga0212120_1002513

Ga0212120_100251310

F038537

MRRSVYVWRELAPLVLRFCRESGICFNEVVNRAISGFLGSCDVERLRLEARLDVLLREEARLRRVCNAMLRSGSYLPGYVRRVLREPGRSLSHLPDPQRPLKALNPREERVFRRIVARREQIAREIAEIEEQLLQDVKPFRLKPDLHGRSRSRRRLCDKKGLKEVKKPNGETAQDG

Ga0212120_1006875

Ga0212120_10068758

F079345

MLSKALNLELEGLSVLQRKLLLELLHRRYPQYWGKFTSHEYSWQSRKEALEEFLQNHQTELVEEFTKSGLHGNGWKTTRKGGIHV

Ga0212120_1011344

Ga0212120_10113442

F103293

MELQALRELSRPYEIYEFVPCHPVDFKVMRYEVGRITIAPRWPGAPPQKTVIAVRLHVDPTTKPTFPYYWDITPSRLVHQLAAMLAADFKPGRTIRIHRDIPGPKAHFTVQWL

Ga0212120_1012238

Ga0212120_10122382

F078228

MAKKFTMSMPDDMYAALEKERQRRKLGTIQELIRFIISDYFKEKTT

Ga0212120_1012506

Ga0212120_10125061

F079345

MLSKALNLELEGLSVLQRKLLLELLHRRYPHYWGKFTSHEYSWQSRKEALKEFLQNHQTELVEEFAKSGLHGNGWKTAR

Ga0212120_1012765

Ga0212120_10127652

F020112

MEKEAPKTRIKGELQMISRAFRKCVELVEEMLGRGYRLQIPSTEVERLIKIGVGADKRTVQKYMRMLTEDLGFLKTAAKNPLGVVIYRIDVEAIEQFVGEHLKDKLRQLKLSDIRLEQNSIEKEVKTEKI

Ga0212120_1016437

Ga0212120_10164373

F025877

MPGLDETENTFRYRVQNPDKFDRFRVKEITHGVKITLGRVKGTSRWEIQNYIFDKKLFRTREQVQKWLEKHLKSEVKTLLDFNAWNEHRKRLLQVYLEISKIA

Ga0212120_1017574

Ga0212120_10175743

F064214

MSEKGDLKVLAKSAEDLAYALRDTLDVLADHERRIKRLEEKLGFLADVESRVVEKAVAGGHVE

Ga0212120_1022683

Ga0212120_10226833

F079345

MLSKALNLELEGLSVLQRKLLLQLLHRRYPHYWDKFTSHEYTWQSRKEALEEFLQNHQTELVKEFVRAGLHGNGWKTTRRSGARVQG

Ga0212120_1032698

Ga0212120_10326982

F004454

LSRDFRRTVVEVREDLHREVRKLALLNDLRIYQLVNAIIEDYLRDGERVKALIKRLRLQFPPPP

Ga0212120_1042210

Ga0212120_10422102

F004454

MRQVYRRTVVEVREDLHREIRKLALLNDLRIYVLANAIIEEFLKDEERVRALVKRLRLQHLGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300022544: Jinze_combined assembly

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences