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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300022517 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0131983 | Gp0256468 | Ga0224540 |
| Sample Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 10-14 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 46253604 |
| Sequencing Scaffolds | 20 |
| Novel Protein Genes | 21 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1 |
| Not Available | 12 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Peatland Microbial Communities From Stordalen Mire, Sweden |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → peatland → peat soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3533 | Long. (o) | 19.0466 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002448 | Metagenome / Metatranscriptome | 558 | Y |
| F005728 | Metagenome / Metatranscriptome | 392 | Y |
| F013930 | Metagenome / Metatranscriptome | 267 | Y |
| F019814 | Metagenome / Metatranscriptome | 227 | Y |
| F021446 | Metagenome / Metatranscriptome | 219 | Y |
| F021450 | Metagenome | 219 | N |
| F025469 | Metagenome / Metatranscriptome | 201 | Y |
| F025952 | Metagenome | 199 | Y |
| F026449 | Metagenome / Metatranscriptome | 198 | Y |
| F026747 | Metagenome / Metatranscriptome | 197 | Y |
| F030615 | Metagenome | 185 | Y |
| F037997 | Metagenome / Metatranscriptome | 167 | Y |
| F042098 | Metagenome | 159 | Y |
| F054454 | Metagenome | 140 | Y |
| F058248 | Metagenome | 135 | Y |
| F059491 | Metagenome | 134 | Y |
| F063193 | Metagenome / Metatranscriptome | 130 | N |
| F072571 | Metagenome / Metatranscriptome | 121 | Y |
| F086362 | Metagenome | 111 | Y |
| F086482 | Metagenome / Metatranscriptome | 110 | Y |
| F100040 | Metagenome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0224540_1000421 | All Organisms → cellular organisms → Bacteria | 1699 | Open in IMG/M |
| Ga0224540_1000696 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1483 | Open in IMG/M |
| Ga0224540_1001058 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → unclassified Bacteroides → Bacteroides sp. | 1309 | Open in IMG/M |
| Ga0224540_1001206 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium | 1249 | Open in IMG/M |
| Ga0224540_1001216 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1246 | Open in IMG/M |
| Ga0224540_1001499 | All Organisms → cellular organisms → Bacteria | 1158 | Open in IMG/M |
| Ga0224540_1003859 | Not Available | 824 | Open in IMG/M |
| Ga0224540_1004240 | Not Available | 797 | Open in IMG/M |
| Ga0224540_1004342 | Not Available | 791 | Open in IMG/M |
| Ga0224540_1005838 | Not Available | 714 | Open in IMG/M |
| Ga0224540_1007068 | Not Available | 669 | Open in IMG/M |
| Ga0224540_1007427 | Not Available | 657 | Open in IMG/M |
| Ga0224540_1007706 | All Organisms → cellular organisms → Bacteria | 648 | Open in IMG/M |
| Ga0224540_1008181 | Not Available | 635 | Open in IMG/M |
| Ga0224540_1008347 | Not Available | 630 | Open in IMG/M |
| Ga0224540_1008485 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4 | 626 | Open in IMG/M |
| Ga0224540_1008666 | Not Available | 622 | Open in IMG/M |
| Ga0224540_1012236 | Not Available | 548 | Open in IMG/M |
| Ga0224540_1013106 | Not Available | 534 | Open in IMG/M |
| Ga0224540_1014525 | Not Available | 515 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0224540_1000421 | Ga0224540_10004211 | F086482 | MPNDLETYRQTLLDLYLRLPDTPCRVSRHDGHLVRQLWERNIPLTTAEAA |
| Ga0224540_1000696 | Ga0224540_10006962 | F025469 | MRRRFHFPPGEFPDAAVLRLSQWRLVQLHRLDLVLAIYGTIALLAKQRLLPKARRALTEAPRKRSYSLEKLQPPLSKLMNRLLIAQQARQGASNGLF |
| Ga0224540_1001058 | Ga0224540_10010581 | F086362 | DNTEEPKFHIAIEIGHYNVIPFPVEYLFYTISTFRQPQYCRDTFSPVIAGGNYTFIVDKRPEGMIFQLKRGENILNILPHAFFPDSSQMFFKDVSSYIDRNKGDSLKKVLMVGKGFAGIDKGIHDFNGQVTSLRIIKYTISNTDSGYELKKVRNQHTENQQIIYTAHDNLSANDKFIILKYQFYPYKFEAGELISGGEMQTGETAKMKNDQPANCYLKSSDIGFYKVTICTIDKDNNLLRSSAKPFEIWVYPKEWDFEFY |
| Ga0224540_1001206 | Ga0224540_10012062 | F013930 | MNSDNKPVRSLREIEMEVLEEGREWTRRRLEQKLQEEANRHGGVFPPQRKKGAPPQAPDDAFAQRRRGR |
| Ga0224540_1001216 | Ga0224540_10012162 | F021450 | MKKTVSLLALLMLFSIEIQAQVTNVLNNFYTVWVKPAIPIIGGLVLIIGALANMGKVLGESRDYKGFITGIVLYVAVYFCLVGIVAFIMAG |
| Ga0224540_1001499 | Ga0224540_10014992 | F042098 | KVPAVFKFDYKVTYEINNEEKKTPETVSYYFTKNGDYMSMESAESEKDKDMNFMVSTKDGLMITFGEEPMPKNPNQHRKVLKVMDMHSMMKGSGEAIAALAKSMPKKENTEAEKKKPNDLDNFVKTGKTRQVFGYTAEEYSKEIKKEENGKMHEGTMSAWYAKVDFDPEMMFSLGMGNMGTGGAQSKVNQTHPNNMLGLGLTQKNYLLIEMDFSEKGGKSGTGMKVVSIEKTGFNKSTEGYFIKNYAGMSMMEMMQKENEEK |
| Ga0224540_1003859 | Ga0224540_10038592 | F030615 | MKKQRFRIISYTKGDTSYYDTKVKTWFGWVSFSVFYKTEILHILSVPSVQKSLAYERIYQYCSIKGYEKKEIEITEINKHESKKWILFQRIYSD |
| Ga0224540_1004240 | Ga0224540_10042401 | F059491 | MTGLELHEFGLALFTSYFSDQGGDLFAINMNPENGAPHVMIWNLQKILLYVWVKTDLSPNIPVYVPNETHDFITKLSRQYKAIPSFASITISCASKEGNLIPKCGGEYYAVLNEFEEI |
| Ga0224540_1004342 | Ga0224540_10043421 | F072571 | DALRELLEGDKEAVIAVESIRELLAKLDTIAPVTMVEVALVDLASFDQLFVEVRQ |
| Ga0224540_1005838 | Ga0224540_10058381 | F054454 | MEKNESLAAPPSKQKRRSRGEWLKEIRSLRDSGLSAKEYATKKGFVFSTLKYWMRVLRNDVEARTKSAVPAFLPVSVLHAATVPSSDAAVMVEVDLANGRRLRMHVRPDTDFKRVSDLLNAVEGGHPC |
| Ga0224540_1007068 | Ga0224540_10070682 | F019814 | NEKLHKKVSPPFEGGVVGTIDYIIYTEFSFPTGVVDSLISFYLY |
| Ga0224540_1007427 | Ga0224540_10074272 | F063193 | TTAFAGLSNPKKDSEKPAVLNTREIKLSNEELSRMTRRAEIDNLGKTNLLNNESSSSSKNLKATNQVYVETRHHRGYGMWYGGGGLLLVVILVIILV |
| Ga0224540_1007706 | Ga0224540_10077062 | F005728 | LSRHRFEAYLDKVFGFSQLVGALPEGRQSPTHPWQKVFDAVFLAAAMQVPSLLQIEAECCRGALAKRIGPIRDDTIGYALQRQSPEPVFS |
| Ga0224540_1008181 | Ga0224540_10081812 | F021446 | TSTGQAQSAAEDIYNDPSPGGKYVYRGCNLAQVIFIRGDKLSEINELTLIIEVQGGQNSHTTRLTFPILAKRQEGNKLILDYQWPLGGDTYEATIIGGTLINRKTKGYLAGIREEMFTRE |
| Ga0224540_1008347 | Ga0224540_10083471 | F025952 | VEFGSTVGELTLAVFVSVPLAGAVTVTVTLLTWPLASVPNVQFTTPLLLAPPPLALTNVTPNGNVSVTVTLLALEGPKFVTEIV |
| Ga0224540_1008485 | Ga0224540_10084852 | F026747 | LQAVTRVKLEQASKAAMWTPTRRKNGEGRDDWEEPGAGARYRITVRTSRSTGVVSTACKEGNLRQWGRLGMVGESRAPNVIFGMTDHLGVGEGQRYRRDRVTPVEGRALASGVLEKEERSGDWR |
| Ga0224540_1008666 | Ga0224540_10086662 | F058248 | MTTHSQSPRDRVLWTLAAHGGKMEQSRLRRCMGVEYALLNPILDELMKEGKIRISDETISLAVR |
| Ga0224540_1012236 | Ga0224540_10122361 | F002448 | MINAKKIGLEFVTALQSLPNLLEALGGDADSIQYYSENRVVFGRRTQNNTREAILSMPLGSIMIVWQGSGPGRLGNAQVYAHNYSLYLRAPEIEDVGYEDICDWIVNDVPVGGSLKMLHTPIDPNCEPMDFQLPNSQRNTVVISADGTTFEYFEVPVRLIESFNP |
| Ga0224540_1013106 | Ga0224540_10131061 | F026449 | TISKSKMISRRLVRGDDAYNLKVTRYKYVEEADNDANKDSALI |
| Ga0224540_1014525 | Ga0224540_10145251 | F037997 | KQVYALRGTAVVGDQASEERFAEITSGRSRWQQGLVATCEDFLHEAKAEGKKSQTGLANESVGAMTEA |
| Ga0224540_1015347 | Ga0224540_10153471 | F100040 | MHIYQKYFLVVLWKILFSQATECIWENAMTKKETRPDLMKIISLGRNGIIDPDYMERWGQFKEDWTEADLAAWNKLKEKMTVSNSGELEFCPPPSSSEKVWAKKFILRAEERGLC |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |