3300022401: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (v2)

Overview

Basic Information

• IMG/M Taxon OID: 3300022401
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0213384 | Ga0216348
• Sample Name: Goat fecal pellet enrichment culture fungal communities from Isla Vista, California, USA - Reed Canary Grass, Gen0, Rep 3, Penicillin and Streptomycin (v2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 464678223
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4148
  • Long. (^o): -119.8405
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041521	Metagenome	159	Y
F046107	Metagenome / Metatranscriptome	151	Y
F076682	Metagenome	117	Y
F086383	Metagenome / Metatranscriptome	110	N
F100397	Metagenome	102	N
F105011	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0216348_1044556	All Organisms → cellular organisms → Bacteria	2089
Ga0216348_1084097	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1318
Ga0216348_1091394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1234
Ga0216348_1144426	Not Available	841
Ga0216348_1165976	Not Available	742
Ga0216348_1168042	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	733
Ga0216348_1187928	Not Available	662
Ga0216348_1194048	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	642
Ga0216348_1233430	Not Available	540

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0216348_1044556	Ga0216348_10445563	F041521	SNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLAHDGLAAVHSDSPLNANSDNVEITAVTEDDLRNNTIATQLGEYWTQGENYPVIRR
Ga0216348_1084097	Ga0216348_10840971	F046107	QKNTMYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGRDSPFVEIGEEPVLLLCLISTTSTLLVKFGILQYLSNNSLKRTT
Ga0216348_1091394	Ga0216348_10913942	F100397	MKKLIAIIALSLSLILCLTACGSKMPYDLSRTASVELHAYNNDSTEPFAKIVVDGEDVGDIVEMFSSLKLKELDYTEPSINGYDFWFKDADGNEIAKLSLPYGPSPWVVFKGTAYQDVNGGVDVDYLAQLVDMAV
Ga0216348_1144426	Ga0216348_11444262	F041521	EFRVDSGAGGFIGKIQENSSEVTIRNCAAYGTIKTNYAKNSYNNTATIYMGGFLSFSNTGAKTTLENCLFAGKFERGANLTDEARLGAFGTLRSVNAIKNCYYLADDGLAAVHSDSDLDTNSDNVEITAVTEEELRDGTIATRLGGSWELGENYPVIKK
Ga0216348_1165976	Ga0216348_11659761	F105011	MLNLFEKENNDLKAKLKRSEDLRLQCLEEKMKLDLKHANVVDDHQIKMDAMRLKIKKIRKYAINQEAWYHYAVGSVITLVAILIAFFVGFKFFR
Ga0216348_1168042	Ga0216348_11680422	F046107	LTNEKKKKIKPKSKIFKIDSVVSTELFPDSSFIELLRRDSAFVEMDDDPALSLCLINATLTLLVKFGSLEYLSINSSNELLMIGITLVKKLRNSAKPTIFWNMVTQMNL
Ga0216348_1187928	Ga0216348_11879281	F076682	RTISVLLLLLLLLSLFPATAFAAEENDISQFEFPTPKAPNYFIYTDGDASEGHHDDLRMIMVTDPEVALLAAEYNADSEAFYEKYGLWSFEIVMQYDVSLDGEDNWQHNAQWDIEYYTGGYADGYSYIALRSELMEDFEFFWLTYHEGQGSNTFKPYQPAIITEKYIGDGYENDIYSFDVENHSLYIRCRYYMEWEPLVEYEEGWGPGEKQSKFSGWSES
Ga0216348_1194048	Ga0216348_11940481	F046107	KNKKLKNTMYFGKLYYAGIFPFLSNKKEIKFRSNILKIDSVVSTKLSPDSSFIELLGRESPFVVIDDNPVLSLCLISTTATLLVKFDILQYLSNNSSKN
Ga0216348_1233430	Ga0216348_12334301	F086383	EKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEENNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHA