3300022060: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26 (v2)

Overview

Basic Information

• IMG/M Taxon OID: 3300022060
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127565 | Gp0198088 | Ga0224900
• Sample Name: Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 30 SPOT_SRF_2012-01-26 (v2)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3369529
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → ocean strait → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 33.55
  • Long. (^o): -118.4
  • Alt. (m): N/A
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004646	Metagenome / Metatranscriptome	429	Y
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F010922	Metagenome / Metatranscriptome	297	Y
F014014	Metagenome	266	N
F056143	Metagenome	138	N
F064092	Metagenome / Metatranscriptome	129	N
F077939	Metagenome	117	Y
F086299	Metagenome / Metatranscriptome	111	N
F098218	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0224900_100096	Not Available	842
Ga0224900_100140	Not Available	764
Ga0224900_100167	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	713
Ga0224900_100179	Not Available	691
Ga0224900_100226	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	641
Ga0224900_100303	Not Available	585
Ga0224900_100317	Not Available	578
Ga0224900_100406	Not Available	542
Ga0224900_100556	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0224900_100096	Ga0224900_1000964	F077939	MNIPMVSIPQVQLDQLIRDLQKAEGYCRRARPASRHPSREELFAEPTEFYSGASGFAGATLRNAIQTIESYL
Ga0224900_100140	Ga0224900_1001402	F010922	MGKYRTPFANNDVIHLIEQNKEPEQKLWIAVLAKAFDDAFYSTDDRAALEALSWIKHGSDFNYVCGLAGRDPNYVRKRMLDKVIQREATILAEHKRVKTGVDNVIQLKKRGPVPGTIKKVYDYKWLPKQEHDYVDR
Ga0224900_100167	Ga0224900_1001673	F004646	MIYAIADVPHEDYDNYDMLNKLFHALSPHGWKNSSCKYESCPSLIKEELYGNTCNIFVDYMNPKLRDYQDLPECAVLRYTCRDADGRPTFHEEFDDVDKLIVFLTEEVN
Ga0224900_100179	Ga0224900_1001791	F006217	MIEILLAMVEDTNQIHKYCMDKHDHWTGRAACVQELQHAQRKMEVEELRQFLKDNPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGTDKVKKEKC
Ga0224900_100179	Ga0224900_1001792	F005813	MKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPNKEAMSWFRWAHDCMLRGQYDDAKEMLRKGLIDDRDTTSNG
Ga0224900_100226	Ga0224900_1002263	F098218	MSGDINWNNRPHEVIAAAKTRALAALHHKHSKGLTTLERAYLHALKTGRLDLDD
Ga0224900_100303	Ga0224900_1003031	F086299	SLVFFILTKRFRNDGPVDTKAAVRKTKTTLRRMKGVVDMYNSVCKPAARRAPARRAAPKAVQLIKN
Ga0224900_100317	Ga0224900_1003171	F014014	MMSLEKDKYYVIISELPDDQFHLVAYDTTGKKYKTFEDHTVASIMHEGVMALLRRRGDEVFRCGEAEIEFNFSAKELQIEYQDETGEKLDLPENVVKVDFGKEQ
Ga0224900_100406	Ga0224900_1004062	F064092	KRTIGMIDKKKILKEELTNKDLENIRLLIRYEVAQIMFDLYRKRKVWGA
Ga0224900_100556	Ga0224900_1005561	F056143	MGKMSDWSIQLEEDFWDTANKVIGGCEYLGQFMQEMEPHRDWLGTHDNAEYAEMLREAWDNYWSDKR