3300021591: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-11-12_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300021591
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0215263 | Ga0190338
• Sample Name: Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-11-12_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129332765
• Sequencing Scaffolds: 20
• Novel Protein Genes: 22
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Archaea	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1
All Organisms → cellular organisms → Bacteria	3
Not Available	6
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1
All Organisms → cellular organisms → Archaea → TACK group	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0114
  • Long. (^o): -110.5956
  • Alt. (m): N/A
  • Depth (m): 2011

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027047	Metagenome	196	Y
F033663	Metagenome	176	Y
F038026	Metagenome	166	Y
F048033	Metagenome	148	N
F054403	Metagenome	140	N
F054534	Metagenome	139	Y
F057027	Metagenome	136	N
F066220	Metagenome	127	N
F075530	Metagenome	118	N
F081982	Metagenome	113	N
F083514	Metagenome	112	Y
F084956	Metagenome	111	N
F088030	Metagenome	109	N
F093027	Metagenome	106	N
F103293	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0190338_1000817	All Organisms → cellular organisms → Archaea → Euryarchaeota	5462
Ga0190338_1001101	All Organisms → cellular organisms → Archaea	4584
Ga0190338_1004406	All Organisms → Viruses → Predicted Viral	2166
Ga0190338_1006924	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1690
Ga0190338_1008298	All Organisms → cellular organisms → Bacteria	1534
Ga0190338_1009807	Not Available	1397
Ga0190338_1017175	Not Available	1019
Ga0190338_1017246	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1017
Ga0190338_1027609	All Organisms → cellular organisms → Archaea → TACK group	779
Ga0190338_1029932	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon	744
Ga0190338_1033505	Not Available	699
Ga0190338_1035220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	680
Ga0190338_1038950	Not Available	644
Ga0190338_1042084	All Organisms → cellular organisms → Bacteria	617
Ga0190338_1042108	All Organisms → cellular organisms → Archaea → TACK group	617
Ga0190338_1044701	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon	597
Ga0190338_1044880	Not Available	596
Ga0190338_1057490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	522
Ga0190338_1059334	Not Available	513
Ga0190338_1061047	All Organisms → cellular organisms → Bacteria	506

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190338_1000817	Ga0190338_10008171	F083514	MVLRIVNAVCGKLKSGKTVIIGYITNLTVDINRFRKKYKREDLKDKDYRTINGLIPGPKA
Ga0190338_1001101	Ga0190338_10011011	F027047	MDAGSLLIAIVSAMVYSLSMYVKKHLNSENPQSFDVAKFVTTVIWGAIVGTALQLSGVPITEQSVEQQFVAYAGLVAITENVVKAIIRAAR
Ga0190338_1004406	Ga0190338_10044061	F066220	MALFVNVREVSLRELMDLARSNEYSVAYTPFGRFGLRTYIRKAAPWKGLKGDAFWEEAKKHKRLAEGLKSAIEISKKFANNTGVALVKYMDGSYGIMPYKSALQGEGRTIAEIVATAPNYFR
Ga0190338_1006924	Ga0190338_10069242	F083514	DMVLRIVNAVCGKRKSVKTIIIGDTTNLTVDINVFRKKYKREDLKDKDYKTINGLIPGPKAIISV
Ga0190338_1008298	Ga0190338_10082982	F084956	MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQVTTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTIMGKGNIMSELNCISRFDELAHRYLKEGDQKDYHGTLSEVIQQFIAVAGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITNINVETSQEDSYRRCHVRGAKIGEDSAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEVTLADLVYPVFGKVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190338_1009807	Ga0190338_10098071	F054534	MSEKEGIEKDYEEIVVKLAVSNDYLKKLEHLIDVKRIFSSRAEAFRRALELLFEKYK
Ga0190338_1017175	Ga0190338_10171751	F027047	GSLLIAIFSAVVYSLSMYVKKHLNSENPQSFDVAKFITTIIWGIIVGVALQLSGVPINEQAVEEQFVAYAGLIAITENVVKAIIRAVRR
Ga0190338_1017246	Ga0190338_10172462	F103293	MIEIEKLKPLSPPYEIFEFVPCQPAYFRITQYEVGKITITPRWPGAPPTKEIACVRLHVDPSTKPYFPHYWDITPSRLVHQLAGLLTTELPPGMYLRIHRDIPGPRAHFSVSWAERPP
Ga0190338_1027609	Ga0190338_10276091	F054534	MSEERVSEKDYEEIVVKLAVSNDYLRKLEQLIDVKRIFSSRAEAFRRALELLFEKYKEALGESSTS
Ga0190338_1029932	Ga0190338_10299321	F088030	MDTTYRIRLIVAVAVASVALTIAVAGIASASPPVPAPNETSLIETSVDATVYSGSYYEEESFDWTYSTKELNDTLENNERVAQIRYDEHTSATDGYTEVKKKFTADGQNTPNLEVDKKIGFVAGDAVTSSLDSTENTGMTIVSEGDTAGGTGVPALCPWAQNACIPPTNELVAAGSQLKDVTLVNSHT
Ga0190338_1033505	Ga0190338_10335051	F093027	MKIGILSILIALVLCIGTVSAFSSIDYSIQASDAVVSVNMKYSNILENETILGSQVVTLDHMDVTSAGMIVGDDTGVVLNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDLGVTGFRADGRMIDLASDVQVELGALSHAARGQVTGSVGMGLITQTPTNRFESVVRSRSAL
Ga0190338_1035220	Ga0190338_10352203	F054403	MALDREDRLFINEVGKKAARVLKTKNLRLWNEFKRRCDENGENPESVLGNYLYRFAKSILDEDGEFAEDLLGRTIRISALARKEGVLESLDEIIAVKKKLEDMGSSKIDKLI
Ga0190338_1038950	Ga0190338_10389501	F057027	GVFEEARREVEEREKRIGFIFPPKNRGEEIHIEILDDTFTQVYEGETGLDDRTVDWTQPQILVRDLKDDRRKAFKLNSGLATQMWRVVEKAGGDPLNMQGSVFTITSMGNYNYEVVYRKPAKEPEIVDERKIEDIVKKVISSGNIPKENISLWVKEYLKVEGLEVPEAVIESVVNRVVG
Ga0190338_1042084	Ga0190338_10420842	F048033	VDKDNFYCEREGSNLVDIWEEHARYIGEEDTLYVRQVEGEDLSEDMQKLIKNFRNAGKTIEYMDKDRYDAYKGEVHFHTENFENEE
Ga0190338_1042108	Ga0190338_10421082	F054534	LAEKEYEEIVVKLSVSNDYLRKLEQLIDIKRIFSSRAEAFRRALELLFEKYEEALRESPSQA
Ga0190338_1044701	Ga0190338_10447011	F088030	SLIETSAVVTVYSGSYYEEETFDWTYSTKELNDTLENDERVAQIRYDERTSATDGYTEVKKKFTADGQNTPNLEVDKKIGFVAGTAVTSSLDSTENVGMTIVTEGDTAGGTGVGALCVWAQDACIPPTNELVAAGSQLKDVTLVDSHTISTVSTTESPQLHHEITAGGPTVEGVNMTAGMGTVAAGMKVSAMEGLNCN
Ga0190338_1044880	Ga0190338_10448801	F027047	MEVGVEFGSVLVAVFSAIVYSLTMFVKKHLNSENPQSFDVAKFITTVIWGAIVGAALQLSGVPITEQSVEQQFVAYAGLVAITENVVKAIIRAAR
Ga0190338_1045885	Ga0190338_10458851	F075530	YTGTPPRVSIYQSSTTGDGLIFYERTIAGEQIFNVTHNSETIVSQVKYKTPVKNFKIRSLLDRSTELVFEKSFLGENGHFNDSNYYRFNPFEGGHVDDCIVAKASGASISPTQIFLDPGEWVQFGLYSLAPFANFPEGHWSGSGDVDAYISLNSTTDTNYMYKVVFANSPYMFPIYNSGCNLLGKDHFYLHLVATT
Ga0190338_1047616	Ga0190338_10476161	F081982	MAENIFVGEFRVIHTDANYNTVADLLSMRSEQFGIQNQASGTEATYERDLQKLPKIPKINDILAEDDKLIVRVRADNDTVVDVDDEGQYILVPVTVRNVRTNVVYPKILAYVDFTDLIDADMTLK
Ga0190338_1057490	Ga0190338_10574901	F038026	MLKFMIYKNENDYVLIIEYEDRAERLLASSIKDLIQVIADTILYNFEGKSKHFEQSHYAKVEIV
Ga0190338_1059334	Ga0190338_10593341	F066220	MGLFVNVREVSLKELMDIARSNEYSVSYTPFGRFGLRTYIRKAAPWKGLKGEAFWKEAEKHGRLADGLRSAINISKTHAGEKGVALVRYVDGSYGIMPYKSALQGQGKTIAQIVATAPNYFRLITLPEASEIVKAGRLQPVVY
Ga0190338_1061047	Ga0190338_10610471	F033663	LINAIKERLEIMQQESSEENVTQVYGIRCKVKGEKIQDWDYDSLTNITFLYKQRRALFNDIQEDGMAVPEFFFEIKRDVSILRDLVLGKF