Sample 3300021588

Overview

Basic Information
IMG/M Taxon OID	3300021588 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0215210 \| Ga0190285
Sample Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-2-3_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	95272852
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine hydrothermal vent biome → ocean trench → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0074	Long. (^o)	-110.591	Alt. (m)	N/A	Depth (m)	2001
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F033662	Metagenome	176	Y
F036102	Metagenome / Metatranscriptome	170	Y
F064356	Metagenome / Metatranscriptome	128	Y
F081982	Metagenome	113	N
F085223	Metagenome / Metatranscriptome	111	Y
F089858	Metagenome	108	Y
F094956	Metagenome / Metatranscriptome	105	Y
F100148	Metagenome	102	N
F102489	Metagenome	101	Y
F104458	Metagenome / Metatranscriptome	100	Y

Family

Category

Number of Sequences

3D Structure?

F033662

Metagenome

176

F036102

Metagenome / Metatranscriptome

170

F064356

Metagenome / Metatranscriptome

128

F081982

Metagenome

113

F085223

Metagenome / Metatranscriptome

111

F089858

Metagenome

108

F094956

Metagenome / Metatranscriptome

105

F100148

Metagenome

102

F102489

Metagenome

101

F104458

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0190285_1000009	Not Available	35025	Open in IMG/M
Ga0190285_1000041	Not Available	23284	Open in IMG/M
Ga0190285_1000678	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	7975	Open in IMG/M
Ga0190285_1001828	All Organisms → cellular organisms → Archaea	4166	Open in IMG/M
Ga0190285_1003614	All Organisms → cellular organisms → Archaea	2513	Open in IMG/M
Ga0190285_1006928	Not Available	1622	Open in IMG/M
Ga0190285_1015671	Not Available	967	Open in IMG/M
Ga0190285_1016577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium	934	Open in IMG/M
Ga0190285_1019308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	854	Open in IMG/M
Ga0190285_1029583	Not Available	656	Open in IMG/M
Ga0190285_1036643	All Organisms → cellular organisms → Archaea	574	Open in IMG/M
Ga0190285_1041700	Not Available	530	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0190285_1000009

Not Available

35025

Open in IMG/M

Ga0190285_1000041

Not Available

23284

Open in IMG/M

Ga0190285_1000678

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota

7975

Open in IMG/M

Ga0190285_1001828

All Organisms → cellular organisms → Archaea

4166

Open in IMG/M

Ga0190285_1003614

All Organisms → cellular organisms → Archaea

2513

Open in IMG/M

Ga0190285_1006928

Not Available

1622

Open in IMG/M

Ga0190285_1015671

Not Available

967

Open in IMG/M

Ga0190285_1016577

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium

934

Open in IMG/M

Ga0190285_1019308

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

854

Open in IMG/M

Ga0190285_1029583

Not Available

656

Open in IMG/M

Ga0190285_1036643

All Organisms → cellular organisms → Archaea

574

Open in IMG/M

Ga0190285_1041700

Not Available

530

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0190285_1000009	Ga0190285_100000958	F102489	MTTKGSLHQREAAQEYKKRGWKVYMPQKVSRYGTQDIFNMFDFVAISPDGSEIDFVQVKTGSTRGFLKKLKDWRETHKVKKVKWLLMVRKDARKYKRKWDVYD
Ga0190285_1000041	Ga0190285_100004110	F102489	MTTKGSLHEREAAQEYEALGWTVYRPPKTRYGTQDIFGMFDLIAISPPSPNGCEIHFVQVKSNSTGGFLKKLKNWREKHKVKEVKWLLMVRLDARKFKRKWKVYR
Ga0190285_1000678	Ga0190285_100067813	F100148	MEKLEALSRGYSLEEIIEYEQLRGIALIKDLETGVEKIYSHSFAKFLEDRNLAEIICVADTVQELMRNRRETARRVTQDRVDKMTRVIERLEKLLESSRSERRRFLDEARIIKRS
Ga0190285_1001828	Ga0190285_10018286	F089858	MEWIEYLVRLRFHINGFYEDKLGKEYVEREIRKKLSIPELEERGWMEIMVSEKGADGLLNIPVKGLELWVEKRKDGRLVLNLGDPDDPKLTCIEVEVEHKDLTMETIKAKDVKYVILGDIPEMGRARLVRIRRPIKVVEVEEEGDE
Ga0190285_1003614	Ga0190285_10036142	F033662	MGGIGKLVSTVIILAISLMLGIAVSHLVISFSKHYTRVEVIASSAHHGDPSIVVVIKNLGGNTLSITDLHLNKIPIASLIGDSIQSINPDITKSSIQVKPGERREIRIDLNPSKWSGGEIVEILIITSSGNKYYAIVNLS
Ga0190285_1006928	Ga0190285_10069282	F081982	MASNIFEGVYRIVHVDANDNTIADLIEMRSEQFGIADAASGTEATYETDLQKLPKLPKVNDILAQDDKLVIKVKADADVGVDVSDEGQYILVPVTMRNARTGVVYPRILAYVDFTDDIDADTTLKAGKWYNWLHYTIPAQTELKLGVSMPDVRTASALSLQWDPDITD
Ga0190285_1015671	Ga0190285_10156711	F081982	MASNIFEGVYRIVHVDANDNTIADLIEMRSEQFGIVDAASGTEATYEKDLQKLPKLPKVNDILAQDDKLVIKVKADADVGVDVSDEGQYILVPVTMRNARTGVVYPRILAYVDFTDDIDADTTLKAGKWYNWLHYTIPAQTELKLGVSMPDVRTASALSLQWDPDITD
Ga0190285_1016577	Ga0190285_10165773	F104458	MRRGWEVEFIDGTTMNESQKSWKQVPKVGIIRLTLHYDGRQWDIHNKGAYLQKKRGSMVPAKPETFRVESRSIGYYEGASKVWYTVDENTGRMRMEVEDI
Ga0190285_1019308	Ga0190285_10193081	F085223	MTSVNETKQKRQNRTVTLYLGNTLAEYQEMISTEEGMQTLIQQVETADSLNWGHLADGHHEGCPRRLRFTHHDGYTRWTKHFDGTQELVTIIRVRCLDCEAVFTIQPSFIVRYKRYDTDAMEKFMVLLFITEDSYRMAGVGQALGMDTHQEGTWVALEKAGQDAISPTSLWGLVQWLGQLSPAQLNLALGVEPPTHIIEDEKHMKECGEKVYVPIVYAPKEALIWWTDYIDSVSEDSLLSSLERFKAISE
Ga0190285_1029583	Ga0190285_10295831	F094956	MLAGDILMSPSVAPPAAKPREPGTIATAVTELTARCILQYVLNVVKNAKCPSSLERAGPYIVVIATARLNWLVDNNSM
Ga0190285_1036643	Ga0190285_10366432	F064356	MIHGVKDQPVHENFTVSDKHGNLITGIDTTAGFTSYVYNPLGAEVTGSVSGFFTELGDGNYRYTFTPDDNGVWYVNVTNQDYFPWGKNDDVYVDTSDLSGIYEIVRRTLGLVHHNMYIDQATYDEFGNMISARVRTYDDAANVGTDVGVIETYM
Ga0190285_1041700	Ga0190285_10417001	F036102	MELKEMQELFRATAEKGPEGQAAFRAFAAAITTPILQKIELESLMRQMFAVERLAPGAQAVYPVAEDFEIPVWVLPG

Scaffold ID

Protein ID

Family

Sequence

Ga0190285_1000009

Ga0190285_100000958

F102489

MTTKGSLHQREAAQEYKKRGWKVYMPQKVSRYGTQDIFNMFDFVAISPDGSEIDFVQVKTGSTRGFLKKLKDWRETHKVKKVKWLLMVRKDARKYKRKWDVYD

Ga0190285_1000041

Ga0190285_100004110

F102489

MTTKGSLHEREAAQEYEALGWTVYRPPKTRYGTQDIFGMFDLIAISPPSPNGCEIHFVQVKSNSTGGFLKKLKNWREKHKVKEVKWLLMVRLDARKFKRKWKVYR

Ga0190285_1000678

Ga0190285_100067813

F100148

MEKLEALSRGYSLEEIIEYEQLRGIALIKDLETGVEKIYSHSFAKFLEDRNLAEIICVADTVQELMRNRRETARRVTQDRVDKMTRVIERLEKLLESSRSERRRFLDEARIIKRS

Ga0190285_1001828

Ga0190285_10018286

F089858

MEWIEYLVRLRFHINGFYEDKLGKEYVEREIRKKLSIPELEERGWMEIMVSEKGADGLLNIPVKGLELWVEKRKDGRLVLNLGDPDDPKLTCIEVEVEHKDLTMETIKAKDVKYVILGDIPEMGRARLVRIRRPIKVVEVEEEGDE

Ga0190285_1003614

Ga0190285_10036142

F033662

MGGIGKLVSTVIILAISLMLGIAVSHLVISFSKHYTRVEVIASSAHHGDPSIVVVIKNLGGNTLSITDLHLNKIPIASLIGDSIQSINPDITKSSIQVKPGERREIRIDLNPSKWSGGEIVEILIITSSGNKYYAIVNLS

Ga0190285_1006928

Ga0190285_10069282

F081982

MASNIFEGVYRIVHVDANDNTIADLIEMRSEQFGIADAASGTEATYETDLQKLPKLPKVNDILAQDDKLVIKVKADADVGVDVSDEGQYILVPVTMRNARTGVVYPRILAYVDFTDDIDADTTLKAGKWYNWLHYTIPAQTELKLGVSMPDVRTASALSLQWDPDITD

Ga0190285_1015671

Ga0190285_10156711

F081982

MASNIFEGVYRIVHVDANDNTIADLIEMRSEQFGIVDAASGTEATYEKDLQKLPKLPKVNDILAQDDKLVIKVKADADVGVDVSDEGQYILVPVTMRNARTGVVYPRILAYVDFTDDIDADTTLKAGKWYNWLHYTIPAQTELKLGVSMPDVRTASALSLQWDPDITD

Ga0190285_1016577

Ga0190285_10165773

F104458

MRRGWEVEFIDGTTMNESQKSWKQVPKVGIIRLTLHYDGRQWDIHNKGAYLQKKRGSMVPAKPETFRVESRSIGYYEGASKVWYTVDENTGRMRMEVEDI

Ga0190285_1019308

Ga0190285_10193081

F085223

MTSVNETKQKRQNRTVTLYLGNTLAEYQEMISTEEGMQTLIQQVETADSLNWGHLADGHHEGCPRRLRFTHHDGYTRWTKHFDGTQELVTIIRVRCLDCEAVFTIQPSFIVRYKRYDTDAMEKFMVLLFITEDSYRMAGVGQALGMDTHQEGTWVALEKAGQDAISPTSLWGLVQWLGQLSPAQLNLALGVEPPTHIIEDEKHMKECGEKVYVPIVYAPKEALIWWTDYIDSVSEDSLLSSLERFKAISE

Ga0190285_1029583

Ga0190285_10295831

F094956

MLAGDILMSPSVAPPAAKPREPGTIATAVTELTARCILQYVLNVVKNAKCPSSLERAGPYIVVIATARLNWLVDNNSM

Ga0190285_1036643

Ga0190285_10366432

F064356

MIHGVKDQPVHENFTVSDKHGNLITGIDTTAGFTSYVYNPLGAEVTGSVSGFFTELGDGNYRYTFTPDDNGVWYVNVTNQDYFPWGKNDDVYVDTSDLSGIYEIVRRTLGLVHHNMYIDQATYDEFGNMISARVRTYDDAANVGTDVGVIETYM

Ga0190285_1041700

Ga0190285_10417001

F036102

MELKEMQELFRATAEKGPEGQAAFRAFAAAITTPILQKIELESLMRQMFAVERLAPGAQAVYPVAEDFEIPVWVLPG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021588: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-2-3_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences