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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021563 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0215278 | Ga0190353 |
| Sample Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-11-12_MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 35541007 |
| Sequencing Scaffolds | 12 |
| Novel Protein Genes | 16 |
| Associated Families | 14 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 3 |
| Not Available | 4 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | N/A | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F033663 | Metagenome | 176 | Y |
| F036512 | Metagenome | 169 | N |
| F038026 | Metagenome | 166 | Y |
| F040420 | Metagenome | 161 | Y |
| F048033 | Metagenome | 148 | N |
| F050064 | Metagenome | 145 | Y |
| F050821 | Metagenome | 144 | N |
| F055334 | Metagenome | 138 | N |
| F057027 | Metagenome | 136 | N |
| F069552 | Metagenome | 123 | N |
| F084956 | Metagenome | 111 | N |
| F089858 | Metagenome | 108 | Y |
| F093027 | Metagenome | 106 | N |
| F098395 | Metagenome | 103 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0190353_100001 | All Organisms → cellular organisms → Bacteria | 66547 | Open in IMG/M |
| Ga0190353_100004 | All Organisms → cellular organisms → Bacteria | 12182 | Open in IMG/M |
| Ga0190353_100147 | All Organisms → cellular organisms → Bacteria | 2393 | Open in IMG/M |
| Ga0190353_100351 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1778 | Open in IMG/M |
| Ga0190353_100370 | Not Available | 1747 | Open in IMG/M |
| Ga0190353_100455 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1632 | Open in IMG/M |
| Ga0190353_100903 | Not Available | 1330 | Open in IMG/M |
| Ga0190353_102565 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon | 942 | Open in IMG/M |
| Ga0190353_102758 | All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium | 918 | Open in IMG/M |
| Ga0190353_104402 | Not Available | 781 | Open in IMG/M |
| Ga0190353_109282 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 596 | Open in IMG/M |
| Ga0190353_110572 | Not Available | 569 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0190353_100001 | Ga0190353_10000120 | F036512 | MYWKVPDYLKKYIRIQDMLRNIFRPCDCGEELKKCIKDKEYFAKRAETLSRALAKSINLPEPPSPSEEMEEINPWKFITKYGKYDILTADKYYYTLPLNTWIKILSPIQTQVEKILPKWRVDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG |
| Ga0190353_100001 | Ga0190353_10000126 | F084956 | MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFIGKIKSETQRTIMGKGNIMSELSCVSRFDELTHRYLKEGDQKDYHGTLSEVIQQFISVAGMDIESKSANDVDMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDNAGNPIYVTGDAVDEMAASNKEIYIEDDTILTEWDARQRAERELKIRNELTDAIEITLADLVYPVFGNVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK |
| Ga0190353_100001 | Ga0190353_10000183 | F048033 | MIVTRLGDMIVVNIDKDNFYCEREGSSLVDIWEEHARYIGEEDTLYVRQIEGEDLNEDMQKLIKKFRDAGKTIEYVDADRYDAYKGEVRFHTKNFEDEE |
| Ga0190353_100001 | Ga0190353_10000185 | F033663 | LIDVIKKGRSEIMQQESLRENVTQVYGIRCKVEDEKIQEWDYDSLTNITFLYKQRRALFEDIQEDGMAVPEFFFEIKRDMSMLRDLVLGKFNILLVIEEEN |
| Ga0190353_100004 | Ga0190353_1000043 | F057027 | MAKKWDRGVFEEARREVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMEGSVFTITSTGNYNYEVVYRKPAKEPEIVDESKIEEIVKKVMSGGNKSKEEIRLWVKEYLKVEGVQVSDVVINSVVDRVVG |
| Ga0190353_100147 | Ga0190353_1001473 | F040420 | MKILILLIMGILLSLSLNQFLVVDSTDSHPYVNGTYVCRDYSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEDSIEIIEPQTNEIIGCVSENCEDYIRIPVWNNQFYYLNLEV |
| Ga0190353_100147 | Ga0190353_1001474 | F036512 | MYWKVPDYLKKYIRIQDMLRNIFRPCDCGEELKKCIKDKEYFAKRAETLSRALAKSINLPEPPSPSEEMEEINPWKFIAKYGKYDILTADKYYYTLPLNTWIKILSPIQTQIEKILPKWREDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYRTEKIWFMG |
| Ga0190353_100351 | Ga0190353_1003511 | F069552 | MKKNRIAWFVVECTKPITIQLRCFKCRFTFPDVPRQLVKNFQSLGRGMYSLVFALKNIDCKEEYFFNNIIEGDVNSTGFGKADVELETTIPNDEEYQKFRRLINKWYEHKVDTFPFFLGIVMYSSYREWRKMKELGVRFLKLWQDGFSKIGWRPEDVSDYEYYFGKDGRSEL |
| Ga0190353_100370 | Ga0190353_1003704 | F055334 | MTSLVDKLNSVMDTLKTEIDDALSDYKVMHFIRFPSATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMEKLRTLRHDDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA |
| Ga0190353_100455 | Ga0190353_1004556 | F038026 | MLKFMIYKNENDYVLIIEYEDRAERLLASSMKDLIQVIADTTLYNFEGKSKYFEQSYHAKIEIV |
| Ga0190353_100903 | Ga0190353_1009031 | F084956 | MRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQVTTPDGWFTYFFPLVRAEIILNQPFTDDNATITIVHNGQLLLDSDVSIHLGKGLKKVVFMGKIKSEAQRTIMGKGNIMSELNCISRFDELAHRYLKEGDQKDYHGTLSEVIQQFITVAGMDIENKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLNGNTLVIEDKNDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDSIGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTKNELTDAIEITLADLVYPVFGKVRVNLPGIAKILELKSLRYTIDENGLFTTLYL |
| Ga0190353_102565 | Ga0190353_1025652 | F089858 | MEWVEYIVRLRFHVNGFIPEKLTKEYVDEQVRKKLSPRDLEGKGLMEIMVSEKGADGLLNIPLKDGSLWVEELKDGRLVLNLGDPDDPKITCLEAHLEHGDLMQETVKARDVRYVILGDIPDMGKARFVRVRKGIKQVELEGEE |
| Ga0190353_102758 | Ga0190353_1027582 | F050064 | MTPNRKFKNVDDLPLREYQKRYVLEWLAWKFYDLFLKLGIEDGYCKSYDPLLIEDDKCHSYVFDLDDGSRHHPYKNLRELEDKLFNEVVKRIKEESVH |
| Ga0190353_104402 | Ga0190353_1044021 | F093027 | MKLGILSILMALLLCIGTVSAFSSIDYSIQASDAVVSVDMSYSNILENETMLGSQAVRLDHMDVTSVGIIMGDDTGVVLNNTLKAMPVRNCLISSGMINQNFVSAIRTKDSYDLGVTGFRAGGRIMDLTSDVQAEQGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVVMNANWQTPQPAVEI |
| Ga0190353_109282 | Ga0190353_1092822 | F098395 | VITPLDLENFVKRIETLEEDSKLHDSLLHDVYENIDQMKKRLNELEKRIKYLESDRESYLKNNVLDE |
| Ga0190353_110572 | Ga0190353_1105721 | F050821 | MIVKEMYCEYCKQNVFHECQSNELWRCVQCQNTRFEIINIPQNEIDWERPVRYLWRSGDIAYVTSALAPNILRLDEMKELLEGERIR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |