3300021558: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co6ic19 200bp no Eukaryotes last

Overview

Basic Information

• IMG/M Taxon OID: 3300021558
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124800 | Ga0224704
• Sample Name: Marine sponge C. singaporensis microbiome, Papua New Guinea CO2 seep, Upa-Upasina 'control', co6ic19 200bp no Eukaryotes last
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 129191742
• Sequencing Scaffolds: 28
• Novel Protein Genes: 30
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → Viruses	1
Not Available	14
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → C. Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina 'control' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.828217
  • Long. (^o): 150.820517
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003751	Metagenome / Metatranscriptome	470	Y
F008031	Metagenome / Metatranscriptome	340	Y
F008797	Metagenome	328	Y
F017657	Metagenome	239	Y
F022311	Metagenome	215	Y
F024330	Metagenome	206	Y
F033840	Metagenome	176	Y
F035329	Metagenome	172	Y
F038198	Metagenome	166	Y
F041143	Metagenome / Metatranscriptome	160	N
F047732	Metagenome	149	N
F051113	Metagenome / Metatranscriptome	144	Y
F051267	Metagenome	144	N
F057290	Metagenome	136	N
F058078	Metagenome	135	Y
F067211	Metagenome / Metatranscriptome	126	N
F080158	Metagenome / Metatranscriptome	115	Y
F082551	Metagenome	113	Y
F082820	Metagenome	113	N
F084109	Metagenome	112	N
F085224	Metagenome	111	N
F097211	Metagenome / Metatranscriptome	104	Y
F104990	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0224704_1000535	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	749
Ga0224704_1012117	All Organisms → Viruses	763
Ga0224704_1014630	Not Available	684
Ga0224704_1015200	Not Available	1202
Ga0224704_1031341	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	765
Ga0224704_1038037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	710
Ga0224704_1043106	Not Available	540
Ga0224704_1045901	Not Available	911
Ga0224704_1046206	Not Available	532
Ga0224704_1050178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1382
Ga0224704_1056940	Not Available	528
Ga0224704_1067044	All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	636
Ga0224704_1069655	Not Available	597
Ga0224704_1071202	Not Available	535
Ga0224704_1071392	All Organisms → cellular organisms → Bacteria	593
Ga0224704_1075064	Not Available	584
Ga0224704_1075867	Not Available	581
Ga0224704_1076105	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1057
Ga0224704_1080711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	745
Ga0224704_1084647	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1441
Ga0224704_1090603	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	948
Ga0224704_1104447	Not Available	619
Ga0224704_1109163	Not Available	755
Ga0224704_1116216	Not Available	656
Ga0224704_1124231	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1875
Ga0224704_1142940	Not Available	630
Ga0224704_1156874	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Annelida → Polychaeta → Sedentaria → Scolecida → Capitellidae → Capitella → Capitella teleta	613
Ga0224704_1168080	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	1062

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0224704_1000535	Ga0224704_10005351	F047732	MQRGYAICTTDLSRILTIAPCKTKFIFVPITSGQVLTDAICFTDISNAKTIESRARKKFEGMPETRIVNVALLYNRIDKQNELSN
Ga0224704_1012117	Ga0224704_10121172	F058078	MEYEIPNEGGTYILNPKTGKRKLVQQTKQAEIPTEVTTDGTTDKEESNSN
Ga0224704_1014630	Ga0224704_10146302	F085224	QMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGARRAGGLSNIAYGKGAMPDPNDGVNREALHYWLEKSEFYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIQRDLTKFNSTPA
Ga0224704_1015200	Ga0224704_10152004	F024330	SNPNSRPKKVTKYAYVIKNQVEWDRMHKRYVVLEGKGKQETQPIPLLHKDNRKAYEDACDVCGWNYKDKEARTLYVTDGTYISPTAIKRMRELS
Ga0224704_1031341	Ga0224704_10313411	F057290	LWSMKHDEGNDRFSFEGRYQQSGPNVTITIVNHGLLANKRVAIDFTSGDLLDGQYIVNSVPDENTIVIVYPFSGTTQGDCTVSNLKIHEYVNTWLLEPNDQPAGNALDKFYKNFEKEQERTRKAAERMALLGYGLPWTGNKDIEFGQKNAPEEVAQFDPTLVTMKLTDTIRRDGRELSRDGKLLNSAASTLMSMQKVLNLDFKLIEDVRIGLVNQPLTDFTPDFQFGEVEGGNYLNGEPITGAGISSMDCSTYN
Ga0224704_1038037	Ga0224704_10380372	F008031	MATYKSDAGAILEPGNQIGRLSSFNHEGVKGWPGVEAFELIGFHKVSSKSGAKANHKSFNITIPSPDRRPDDRVRSDRSSLVVNASSDRPAYIYQASIAIGQDIPSGGLPSFPASPVTADIGGTNTEVILLGPDNGGAPLGVPSTQQNGLAAATSTLTFSGTTIDQGTSNVSVGKLPFW
Ga0224704_1043106	Ga0224704_10431062	F084109	THTSLPVEMSKRDYEARIRELLEQCEIIKMPYEVTKEGQFNSHLDDFIYNQAIADEIEDVLNHCVWKDDGKIFFQLTSLERYFKKIQFKEFSSTQMGSLIRDRGGDSKKVRINPNTIKNLFYIPDPKPKQEAKLNVPQVKSDVPF
Ga0224704_1045901	Ga0224704_10459011	F038198	MAIEKVTLKNVRVTVNFDIDLDTLKRYLETKERDFDDVMAIYDMICTQSDRLNEQGEPENIRAYFDIDPETLNLVEDEVRKSIKFKTSFHPHLKRIK
Ga0224704_1046206	Ga0224704_10462061	F022311	MPKSITDSSYDPIYDQIRGILGEHFENYCFIVMNEQGELFYDYNHLPAGRMLLHEMQKELSEGNINFEWEFENDPDDLEEEE
Ga0224704_1050178	Ga0224704_10501782	F041143	MIDNPRISGIDWQGLQKGDLVPHHQVKEFFHSIFPDKEWDDFSMVKVIDKLMKLRETINRPLIIKEVYKDQSLRVLTDKESVDYSAQQANAGIKKHRRHTRRLFTHINKDNLDPAKQRELETKQIHHAFIASAADGARKESLQLQRKGERRREGPG
Ga0224704_1056940	Ga0224704_10569401	F085224	PYSIWSGVMLELIEMGVPMFYPSKSLLKRWDESYGMMFHRTHEFGSGRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLTKTSSTPA
Ga0224704_1067044	Ga0224704_10670442	F051113	KGLLMAGADRAIRELMFIFKDDPIETPLEEATMSVWARMQLEE
Ga0224704_1069655	Ga0224704_10696552	F085224	QMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGKGAMPDPNDGVNREALHYWLEKSEWYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTG
Ga0224704_1071202	Ga0224704_10712021	F085224	LELIEMGVPMFYPSKRLLKRWDERYGMMFHRTNAFGERRAGGFSNVAYGKGSMPDPNDSVNREALHYWLEKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWVEIRRDLSKSNSKPA
Ga0224704_1071392	Ga0224704_10713921	F097211	GEGYPTNNTVVSGGFAVSAVGADSRIPNGTVASTNIIDSSLLEKTTAQTQWKLFATTDASPVVQGSGVYDPRAANNFLSGDNKALAICEVCWILPDSPPERQDVALQPDGLTESSVYTSTSPS
Ga0224704_1075064	Ga0224704_10750641	F017657	MEDNRKEALNKATKAKQKMAVEAEMMKQLQPTVPEVTAANIDMQPGINPNPKPEGPVINPNVFNPGNIYPGISGNTKLAATWNPMMDPAAG
Ga0224704_1075064	Ga0224704_10750642	F082820	YLKMRKLIDGLAIASFVLSLTTVGAIGFGYLALTNKTNQEKIKNYAIGEAQKLLKDQLTKSIPSLPSATGDVVPAKPSLPKF
Ga0224704_1075867	Ga0224704_10758672	F085224	SIWSGVMLELLEMGVPVFYPSKILLKRWHERYEMVYQRSSGGRRSAGGFSNIAYGKDLMPDPNDSVNREALHYWLDKAEWYNWDVRYFDSPADLHEQLKAADFEALHRDVLKTRARMDKIRDERWAEIQRDLTKTSSTPA
Ga0224704_1076105	Ga0224704_10761052	F067211	MSFLEPVIASLLGAAVTALAVFLKKNMTAVALLKYGPLVQKAYDIIDPVLDKNLSNWDGSKVDKAFELAVESVADGELSATEIKKLAVHMAQSWLPGAAAQKVRLLEQNGMPLEQRKAAEDITAKVNTAS
Ga0224704_1080711	Ga0224704_10807112	F008797	YFEFFLACKLGMTIGRLRTELSDAGLVHFVALYEVKEEQEEKAMNLVLK
Ga0224704_1084647	Ga0224704_10846471	F003751	MASYTAEKGAILQPGNQINRLSSYNTEGVFGWPGFELYEMVGYVKVTNLAADKADNKSFNLTVPSPDRRSSDRVRDDRTSLVVQADADRPAYIYSASICIGQDIPSAGEPSYPATPLTADIDGTNTEILLFGPDNSGSPYGVPATQANGLAAATAVTTAFSSGTIAQGESDVSVAEAPFWTSVTTSGIDDQDAANAMMYRVTADTTFKVYNVNAVTSTSVDGDGVFISSADKDAGKAAYIICR
Ga0224704_1089498	Ga0224704_10894981	F104990	MNSKERKWTIDRLDDSDWQRMKEHMDKKFPNMKLPDVESFKELGRLYGLATEYHEKKLN
Ga0224704_1090603	Ga0224704_10906031	F080158	MATYKSEAGAILQPGNQINKLSGYNDEGVFGWPGVEAFELIGFAKVTNLVGTKASHKSFDLTVPSPDRRPDDRVRDDRTSLVVQASTDRPAYIY
Ga0224704_1104447	Ga0224704_11044471	F082551	MAQSYPIWIDVSGDNYKKDKSFGSRDHVSLDIKVGSSKTYSNDLARVSIHMREDEAGNRTFARALDGLVVRSAVMTKEKKFYHRDPRKASA
Ga0224704_1109163	Ga0224704_11091632	F085224	RPARLRHPRAHFRDYVTGISEAFNNFSYRDLLRFKAVVMFPYSVFSGMMLELIQMGVPMFYPSKSLLKRWDEKYGMMFHRTNAFRERRAGGFSNIAYGANSAPDPNDSVNHEALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKSNSTPA
Ga0224704_1116216	Ga0224704_11162162	F033840	MSVFDYKLNRRQQLVKKGEMIDNNIDFSGRTNTDFTNKFVAKMRDTNNLYTRESPGQFDDQKAEVVRKNLLTQADDRGQFNDPSQQVRSDAFLAKFRNSVLVNEEEKPSRQGILQYMQGNPKDPPVNGQFPTDGVKVS
Ga0224704_1124231	Ga0224704_11242312	F051267	MAICWINYTNAEAIFTYANHEQEMAETEFRLDVSADESEVISKLIKSYFDMDNAEDREMISDIVKVSFCFSDTEYPQKLKKKEAEKFWELPTMKAFLERNGKYYFDEEQRDDVETSIKELLDCWKEEIV
Ga0224704_1142940	Ga0224704_11429401	F085224	FSYQDLLRFKAIVMFPYSIWSGVMLELLEMGVPMFYPSKILLKRWHERYEMVYQRSSGGRRSVGGFSNIAYGADSAPDPNDGVNREALHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDARWAEIKRDLTKTG
Ga0224704_1156874	Ga0224704_11568741	F085224	VMFPYSVWSGVMVELLQMGVPMFYPSKRLLKRWDESYGMMFHRTNAFGERRAGEFSNIAYGKGAMPDPNDSVNREALHYWLEKSEWYNWNVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRDERWAEIRRDLAKTSSTPA
Ga0224704_1168080	Ga0224704_11680801	F035329	MATRKSLVLISGLTQELNSSSDKLDFAGNSTSDLSE