3300021545: Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co46is 200bp no Eukaryotes last

Overview

Basic Information

• IMG/M Taxon OID: 3300021545
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117787 | Gp0124751 | Ga0224706
• Sample Name: Marine sponge C. singaporensis associated microbial community from CO2 seep in Upa-Upasina, Papua New Guinea - co46is 200bp no Eukaryotes last
• Sequencing Status: Finished
• Sequencing Center: University of New South Wales
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 68024181
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	1
Not Available	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps
• Type: Host-Associated
• Taxonomy: Host-Associated → Porifera → Unclassified → Unclassified → Unclassified → Coelocarteria Singaporensis (Marine Sponge) → Seawater And Marine Sponges Microbial Communities From Papua New Guinea Co2 Seeps

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Upa-Upasina 'bubble' site, Papua New Guinea
• Coordinates
  • Lat. (^o): -9.8241
  • Long. (^o): 150.825833
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F044550	Metagenome	154	N
F047732	Metagenome	149	N
F076185	Metagenome	118	N
F085224	Metagenome	111	N
F089014	Metagenome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0224706_1006710	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1330
Ga0224706_1020110	All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl	595
Ga0224706_1037309	Not Available	712
Ga0224706_1038720	Not Available	1008
Ga0224706_1058525	Not Available	517
Ga0224706_1068309	Not Available	519
Ga0224706_1075241	Not Available	543
Ga0224706_1079807	Not Available	682
Ga0224706_1100422	Not Available	641
Ga0224706_1107887	Not Available	862

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0224706_1006710	Ga0224706_10067101	F047732	MQRGYAICTTDLSRILTIAPCKTKFIFVPITSGQVLTDAICFTDISNAKTIESRARKKFEGMPETRIVNVALLYN
Ga0224706_1020110	Ga0224706_10201101	F001806	MDAGTRQKRVEGLEAIKNKALSMAEEGVDSLEVRDFVTAAKKELAYELPDEDAFQKAARAVIAYRRKQGE
Ga0224706_1037309	Ga0224706_10373091	F085224	FSVTMLELLQMGVPMYYPSKSLLKRWDERYGMMWHRTNSFRQRRAGGFSNIAYGKGSMPDPNDSVNRDALHYWLEKAEFYNWDVRYFDSPADLHEQLKQADFEAMHRDVLKTRARMDKIRDARWAEIRRDLAKSNSTPA
Ga0224706_1038720	Ga0224706_10387201	F085224	KRLLKRWDESYGMMFHRTNAFGERRAGGFSNIAYGKGAMPDPNDGVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLTKTA
Ga0224706_1058525	Ga0224706_10585251	F089014	MSQINIRNLSNENDDGSPEIVGVSTFSATSFFVPPKGSTAERPSDCEPGSIRFNTDTANLEYFRGKTIGWSQFELVNPNLGGGTG
Ga0224706_1068309	Ga0224706_10683091	F085224	YLRPYRRLITRTLNGFSYQVLWRFKAIGMFPYSIWSGVMLELLEMGVPVFYPSKILLKRWRERYEMVYQRSSGGRRSAGGFSNIAYGKDSAPDPNDGVNREASHYWLDKAEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIRDERWAEIKRDLAKTSSTPA
Ga0224706_1075241	Ga0224706_10752412	F076185	NRSGKAFNTTNRMIAMVNKLFNKAPTVLDDIKFGIVNKPLSEFTNVFEAGLLQAGDYINGELLDAAANTSNMDAGTYNPETAQDTVVDAGLYINV
Ga0224706_1079807	Ga0224706_10798072	F085224	YGMMFHRTSKHGQRSAGGFSNIAYGADSAPDPNDSVNPDALHYWLDKSEFYNWDVRYFDSPADLHEQLKAADFEAMHRDVLKTRARMDKIWDARWAEIRRDLAKSNSTPA
Ga0224706_1100422	Ga0224706_11004221	F085224	YRDLLRFKAIVMFPYSVWSGVMVELLQMGVPMFYPSKSLLKRWDESYGMMFHRTNAFGERRAGGFSNVAYGKGSAPDPNDSVNREALHYWLEKSEWYNWDVRYFDSPADLHEKLKAADFEAMHRDVLKTRARMDKIRNERWAEIKRDLTKTA
Ga0224706_1107887	Ga0224706_11078871	F044550	LHIGAYVMTKRLMRVRKLYSLILDEDAKYCLLKLDTDSKDYVELDHDLDLFALTRLLFQQDNDHYHKIPNKKE