3300021508: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-0-1_MG

Overview

Basic Information

• IMG/M Taxon OID: 3300021508
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129088 | Gp0215208 | Ga0190283
• Sample Name: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4869-18-0-1_MG
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 242313859
• Sequencing Scaffolds: 27
• Novel Protein Genes: 27
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	1
Not Available	14
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	1
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Sediments And Microbial Mats In Various Locations
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → ocean trench → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Mexico: Guaymas Basin
• Coordinates
  • Lat. (^o): 27.0074
  • Long. (^o): -110.591
  • Alt. (m): N/A
  • Depth (m): 2001

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004454	Metagenome / Metatranscriptome	437	Y
F009686	Metagenome / Metatranscriptome	314	Y
F014681	Metagenome / Metatranscriptome	261	Y
F029273	Metagenome / Metatranscriptome	189	Y
F031503	Metagenome / Metatranscriptome	182	Y
F033261	Metagenome / Metatranscriptome	178	Y
F048322	Metagenome	148	Y
F051940	Metagenome	143	Y
F054974	Metagenome	139	Y
F060609	Metagenome / Metatranscriptome	132	Y
F064356	Metagenome / Metatranscriptome	128	Y
F076639	Metagenome	118	Y
F077150	Metagenome / Metatranscriptome	117	Y
F080879	Metagenome	114	Y
F081982	Metagenome	113	N
F091298	Metagenome / Metatranscriptome	107	Y
F092844	Metagenome	107	Y
F100426	Metagenome	102	Y
F102489	Metagenome	101	Y
F104458	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0190283_1000449	All Organisms → cellular organisms → Archaea	21479
Ga0190283_1001130	Not Available	12599
Ga0190283_1001786	Not Available	8907
Ga0190283_1002236	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → delta proteobacterium NaphS2	7454
Ga0190283_1002912	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	5900
Ga0190283_1003752	Not Available	4768
Ga0190283_1005226	Not Available	3640
Ga0190283_1017760	Not Available	1534
Ga0190283_1023213	All Organisms → Viruses → Predicted Viral	1293
Ga0190283_1028088	Not Available	1143
Ga0190283_1029784	Not Available	1102
Ga0190283_1029889	Not Available	1100
Ga0190283_1030875	Not Available	1077
Ga0190283_1039349	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	926
Ga0190283_1041448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	896
Ga0190283_1042739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → unclassified Mycoplasmatota → Mycoplasmatota bacterium	879
Ga0190283_1051504	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	784
Ga0190283_1059048	All Organisms → cellular organisms → Bacteria	722
Ga0190283_1069702	All Organisms → cellular organisms → Bacteria	655
Ga0190283_1070482	Not Available	651
Ga0190283_1081438	All Organisms → cellular organisms → Bacteria	599
Ga0190283_1083368	Not Available	591
Ga0190283_1086262	Not Available	579
Ga0190283_1092486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	556
Ga0190283_1094271	Not Available	550
Ga0190283_1096051	Not Available	544
Ga0190283_1110546	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Heimdallarchaeota → Candidatus Heimdallarchaeota archaeon	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0190283_1000449	Ga0190283_10004492	F029273	MILKDYLDYLEERPKRTTRSTISRQTKIKRATGQLGTAMARKKKDPLYKRMVYFRTNYFKYREMIRKKYSPRVRSKARR
Ga0190283_1001130	Ga0190283_10011303	F064356	MIHGVKDKPVDEHFTVSDAAGNLISGIDTTSFTVYIYNPSGNNVAGSLSDFFTELGDGSYKYTFTPGVNGVWYVNVTHPTYFPWGKTDDIYVDETDLSGIYEIVRKTLGLVHHNFYIDEAQYDEFGNLISSRVRIYSDAASVGTNNNVTETYLITADGTACGQFSYWRQVQI
Ga0190283_1001786	Ga0190283_100178610	F029273	MDLLDEYLNILNEKPKRTTRSTISRNTKIKRATGQMGTAMARKKNDPMYKRMIYFRDNYFKYREMIRKKYSPRVRSRARR
Ga0190283_1002236	Ga0190283_10022368	F060609	MNELQQTEAVSVSRREFCRKAIKRSSVAAAVGVAGYLSYKKPAVRSFFGANDAYANGTPATAGKFSLKGDSN
Ga0190283_1002912	Ga0190283_10029124	F102489	MSSASRKGYRSQAEAAEEYKKRGWEVFVPPKSKYGTQDIFGMFDLVAISPDGCEIHFVQVKSNSTRGFLKKLKEWHEKHVVKKVEWRLMVRLDARKHKRKWKVYQ
Ga0190283_1003752	Ga0190283_10037527	F051940	MESKRNIVEEKSANVAMIGGVVGILITLIIAVLVFYSIAGSIDTTTIDADLTGTPALNATDATLDQTATFFSIAPIIGVVAVAVVILGYVKSIG
Ga0190283_1005226	Ga0190283_100522610	F077150	MTVQYIHLGHEDFKNLEKQMKAFRETTHKTEGGFYHKSIRLSIDEHLIMEFHGPLVGGYGHSVRNKQGAEE
Ga0190283_1017760	Ga0190283_10177603	F014681	MKMLNKLMAFLMAMTSELKDDTRGMIDLGIVLAIGVAFVGLMVVAYIIFTVSDSLNATGAAANTIANITTGFDDAVALILIAITIFILAIAISALLMLRGRNN
Ga0190283_1023213	Ga0190283_10232131	F004454	LDGKRVRRTVVEVRDDLHGEIRKLALLNDLRIYELTNAVLEEFLKDRERVKALIKRLKVESGR
Ga0190283_1028088	Ga0190283_10280882	F048322	MLWRLQKMQEYWWYVEVFCKCPQRKELVQITGENRSV
Ga0190283_1029784	Ga0190283_10297842	F081982	MASNIFEGVYRIVHVDANDNTIADLIEMRSEQFGIADATSGTEATYETDLQKLPKLPKINDILAQDDKLVIKVKADADVGVDVSDEGQYILVPVTMRNARTGVVYPRILAYVDFTDDIDADTTLKAGKWYNWLHYTIPAQTELKLGVSMPDVRTASALSLQWDPDITD
Ga0190283_1029889	Ga0190283_10298892	F060609	MERKKMKKSLKPTTDSIDRREFCKKAIKRSSVAAAAGVAGYLAYKKPAVRSFFGASDAYAATTATGGKFSLKGDSD
Ga0190283_1030875	Ga0190283_10308752	F092844	MLIIAFFTDNGVPKTGLNPKLDIWKEDGTHTINDQAMTEIAGGFYKYDFTAYDEDDNYCIRADGTSILSGAERYVYSTNETGGVGKILKIQKNKWEIKGNQMIFYDNDGTTEIYKFNLQTKSGSPTEKDVYKRIPI
Ga0190283_1039349	Ga0190283_10393491	F102489	MSSASRKGYRSQAEAAEEYKKRGWTVFVPQKSKYGAQDIFGMFDLVAISRDGSEIHFVQVKSNSTRGFLKKLKEWHENHKVKKVEWRLMVRLDARKHKRKWKVYR
Ga0190283_1041448	Ga0190283_10414482	F054974	MKRSQLNKSRFIVGLVLIAIAVLILLFNLGEYSTAGVIGLSVLGLVSIAISRRK
Ga0190283_1042739	Ga0190283_10427393	F104458	MGFRGWTVEYDDGTVIREGQMEWKEIPKINMKRLTLHYDGRRWDIVDKLAYVQKKRASMIPGVQESFQVESRSIGYYEENQKVWYTVEEATGKMTMEVTAINVN
Ga0190283_1051504	Ga0190283_10515042	F080879	MKVEKPEKIVGYVLLVIGLIFIIIPAWLAYSIFSSGTQIPQLVPTPMGSENDFSKAFAIFSNVCLIFFIFAIIMWAGSIISSRGVTLIKEVKLKVAKASPGGEVEVVKEEKTEKT
Ga0190283_1059048	Ga0190283_10590482	F076639	MKKTESQSEPERAPICWMHEAIAYLGLDRLGLARPDLAVHRLIRKGALHPRKIGGHLAFDKSELERVAANGDQKRGRGRPRKLP
Ga0190283_1069702	Ga0190283_10697021	F048322	MLWCLQKKQKYWWYVEAFCKCPERKELVQIAGKNRSI
Ga0190283_1070482	Ga0190283_10704821	F009686	MFERSFQRPKNYFKLSEERQWEIDSNLRILDWKGDITEEENARFQNHYE
Ga0190283_1081438	Ga0190283_10814381	F033261	KTRRDEQGQLVREVEDDDTAFFLSAWLRCLVFNLMTCFAQAMGGEYTKMWAGTLLRKFIRRPATLYLVDKELHVVFDPFPDQDEFQPLLDKLNAKRTALPWLNNLVVQFRIAEEEPLHPLTEPEKRNRLFGDD
Ga0190283_1083368	Ga0190283_10833683	F048322	MLWCLQKMQEYWWYVEAFCKRPERKGLVQIAGKNRSI
Ga0190283_1086262	Ga0190283_10862621	F031503	MDRKEMMELFKATAEINTPEGVAAYRAFAAALTTPILQKIELESIMRQLFAVERLAPGAQAVYPVAEDFEIPVWVLPGLGYVAQNFIEGIGEEVYVPTFTIDASADWKITYARDSRIDIPSRAAARAAKDLANYEEECGWRVIMPAATA
Ga0190283_1092486	Ga0190283_10924861	F091298	MASMATLEATSPAQTLERLSIGELIRDVRIVGLLDLDPLVVSRWLCGEDMRGIYQPILLRHCILDGLDMEKRTFYELVELVGCHIAAAHFAHAYFYSSVMIEDCVFEGKFDGRGIQNDGRMVIHNTVFVGWAEFAGISLRGRVNLVDLSFPGGTNLLHVLVNDSPERLGREIM
Ga0190283_1094271	Ga0190283_10942711	F081982	MASNIFEGVYRIVHVDANDNTIADLIEMRSEQFGIADAVSGTEATYETDLQKLPKLPKINDILAQDDKLVIKVKADSDVGVDIDDDGCYILVPVTMRNARTGVVYPRILAYVDFTDDIDADTTLKAGKWYNWLHYTIPAQTELKLGVSMPDVRTASALSLQWDPDITD
Ga0190283_1096051	Ga0190283_10960511	F100426	MARNRIIYASQSVWANGDVLYRVQSLGTTTTFTSEDIFELGHLDIIDVVDDVPAVAVTLNTNEFGDVETFAMLAQVQPIKRAMDASAVDATANLV
Ga0190283_1110546	Ga0190283_11105462	F029273	MDLLEEYLNLLNEKPKRTTRSTISRNTKIKRATGILGTAMARKKNDPIYKRMVYFRTQYYKYREMIRKKYTPRVRSRARR