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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021500 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0129088 | Gp0215272 | Ga0190347 |
| Sample Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-5-6_MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 159679707 |
| Sequencing Scaffolds | 8 |
| Novel Protein Genes | 11 |
| Associated Families | 10 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata | 1 |
| Not Available | 5 |
| All Organisms → cellular organisms → Bacteria | 1 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | N/A | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008501 | Metagenome | 332 | Y |
| F015411 | Metagenome | 255 | Y |
| F042291 | Metagenome | 158 | Y |
| F045994 | Metagenome / Metatranscriptome | 152 | Y |
| F075530 | Metagenome | 118 | N |
| F084957 | Metagenome | 111 | N |
| F086602 | Metagenome / Metatranscriptome | 110 | Y |
| F088030 | Metagenome | 109 | N |
| F093027 | Metagenome | 106 | N |
| F096388 | Metagenome | 104 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0190347_1000035 | All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata | 37376 | Open in IMG/M |
| Ga0190347_1021892 | Not Available | 1172 | Open in IMG/M |
| Ga0190347_1036647 | All Organisms → cellular organisms → Bacteria | 838 | Open in IMG/M |
| Ga0190347_1036848 | Not Available | 835 | Open in IMG/M |
| Ga0190347_1040190 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanophagales → unclassified Methanophagales → Methanophagales archaeon | 789 | Open in IMG/M |
| Ga0190347_1047395 | Not Available | 710 | Open in IMG/M |
| Ga0190347_1055121 | Not Available | 646 | Open in IMG/M |
| Ga0190347_1074758 | Not Available | 531 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0190347_1000035 | Ga0190347_100003572 | F042291 | MPIYQSWNPRTKRWVKYHFTKKGIQIVDVKQRNPSKPFKNIPIKRKKNASKK |
| Ga0190347_1000035 | Ga0190347_100003574 | F015411 | MKRRNSRFGRKDGSQYGWNRGGRGRNRTTKCRHPSIKRKRR |
| Ga0190347_1021892 | Ga0190347_10218921 | F008501 | MKQYLKTSAVDLTDLAIGIVVLGIVVSIGATILLNVRDTNTTNDTAWNLSNSAATGLAEYGNWFDIIVIVGVAAVILSLIFMAFGRRSGAGGGVTY |
| Ga0190347_1025660 | Ga0190347_10256604 | F045994 | MAELLTDEIIIEKLNEDGIMQEPDGPWLLEYIQEQHGGKLDNTSDFVDDKWTLKIYSESTADCYDIYWCTHEEKPYVSQD |
| Ga0190347_1036647 | Ga0190347_10366472 | F096388 | MIRIPILDNREDRNWFHQFEHPVYIMLGGNNKLIERKLKQDMKLLKWREWWKNPRKKIDLLSGTEDGYRWRVRLLVNTFGDMSVVFDFS |
| Ga0190347_1036848 | Ga0190347_10368481 | F086602 | LSEESQIHFYTPAVRYPNNVTQWEQLQESDFDADPFVFDKHADLPIEQRPVYRLADTEMTINVREGNKVVGTVTLRAVVLHDPQGEKPAERWPIVLLTDDREIEARALLNEFGDHWGQEVAHRIGRHDLHLDILPLGYILKTRRDDQGQLQREVEYDQTAFFLSAWLRCLVFNLMSRFAQAMGGEYTKMWAGTLLRKFIRRPATLYLIGKELHVVFDPFPNQNELQPLLDELNLRRTALPWLNNLVVQFSIAQDEPLHPLIEPEKRNRLFGYG |
| Ga0190347_1040190 | Ga0190347_10401901 | F088030 | EEESFDWTYSTKELNDTLENEERVAQIRYDERTSATDGYTEFKKEFTADGQNTPNLEVDKKIGFVAGTAVTSSLDSTENTGMTIVTEGDSAGGTGVGALCVWAQDACIPPTNELVAAGSQLKDVTLVNSHTITTVKTTESPQLHHEITAGGPTVEGGNMTAGMGTVAAGMKVSAMEGLNCNDTHPLASRLTYNELSRATGMWKFAKSMTYTAQIPTISVPIQYPIFSWP |
| Ga0190347_1047395 | Ga0190347_10473951 | F093027 | MKLGILSVLIALVLCIGSVSAFSSIDYSIQASDAVVSVNMKYSNILENETILGSQVVRLDHMDVTSAGMIMGDDTGVALNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDLGVTGFRADGRMMDLASDVQAESGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVVMNANWQTPQPAVEIEVPSSDISSLCVWVTQSSYPVFPIS |
| Ga0190347_1055121 | Ga0190347_10551211 | F084957 | MNIEDYKKKKIEKVKCPSGLEVTINNITPYTLLKILDKLGMNARSEQIYSKPVIDELFKVSLRDPVVGRDIELDDFLREDYIFLHDLIFERVTLPEE |
| Ga0190347_1060119 | Ga0190347_10601191 | F075530 | GEQIFNVTHNSETIVSQVKYKTPVKSLKIRSLLDRSTELVFNGAFLGENGHFNDSNYYRFNPFESGHVDDCIVAKASGASVYSSQIILDSGEWVQFGLYSLAPFANFPEGHWSGSGNVDAYISLNSTTDTNYMYKVVFANSPYMFPIYNSGCNLLGKDHFYLHLVATTYTSITNMEIRSPVSFANKGFVYLYPNEANKIFIGY |
| Ga0190347_1074758 | Ga0190347_10747582 | F015411 | MPKKGYGLKDGSQRGKKVGGRGRNRTSNCRHPKIKKGRK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |