NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021484

3300021484: Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-3-4_MG



Overview

Basic Information
IMG/M Taxon OID3300021484 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0129088 | Gp0215270 | Ga0190345
Sample NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-3-4_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size106167820
Sequencing Scaffolds11
Novel Protein Genes13
Associated Families13

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → Viruses1
All Organisms → Viruses → Predicted Viral1
Not Available5
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Archaea1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)N/ADepth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000898Metagenome / Metatranscriptome845Y
F008424Metagenome / Metatranscriptome333Y
F025922Metagenome / Metatranscriptome199Y
F035775Metagenome / Metatranscriptome171Y
F040581Metagenome / Metatranscriptome161N
F044793Metagenome154N
F045994Metagenome / Metatranscriptome152Y
F050310Metagenome145Y
F063346Metagenome129N
F064356Metagenome / Metatranscriptome128Y
F071990Metagenome / Metatranscriptome121Y
F094688Metagenome105N
F094909Metagenome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0190345_1004099All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2650Open in IMG/M
Ga0190345_1008665All Organisms → Viruses1514Open in IMG/M
Ga0190345_1009736All Organisms → Viruses → Predicted Viral1397Open in IMG/M
Ga0190345_1017767Not Available943Open in IMG/M
Ga0190345_1022300Not Available817Open in IMG/M
Ga0190345_1025897All Organisms → cellular organisms → Bacteria745Open in IMG/M
Ga0190345_1031931All Organisms → cellular organisms → Archaea657Open in IMG/M
Ga0190345_1040879Not Available568Open in IMG/M
Ga0190345_1042101All Organisms → cellular organisms → Bacteria558Open in IMG/M
Ga0190345_1045759Not Available530Open in IMG/M
Ga0190345_1048984Not Available509Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0190345_1004099Ga0190345_10040992F094909MVAMFNEKVLDWIEGYVLTRMLIFGDFVGTVNRTELMFDLDTSSDYFRIYEGQRIQALSLPVKSRRLCTLLGEIEACFQRGWKLLDAQEWTEADFNEVFELSKQISAEIMALREEYKRDGSERRSDQVGINLGGSQ
Ga0190345_1008665Ga0190345_10086652F035775MARKANIVVYRKPKRKSHPHSKNASKGQTGYKKKYIGQGR
Ga0190345_1009736Ga0190345_10097362F008424MEKKINILERLLYLTLIAGICFFMGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKRDDLERIIYGNK
Ga0190345_1017767Ga0190345_10177672F044793MIINPSSYTSAIPVALNDDINIPGPEVRKSGTTTSLTNDKLVDTNGNFLQTVDANGNITNQGVQVGQVVYNMAAMNTTAWLGPEAAVVKSVDSNTQLTLSANIFPVTGAPSTTQQYKIYDANKLPKGAIIMVGDNQAGNNSKSDVFVKTLDGQDVLVQGVAPGETLDLVVQRVMVGSAATAGAPSTLTTAEKITAFI
Ga0190345_1022300Ga0190345_10223003F040581MEFLEDGNYNGIRFMGNGNVYNGYLNQEQTWKEYRQWALKNIYEEN
Ga0190345_1025897Ga0190345_10258971F063346MNVEHRTSNVEHRIMYSTIYNKDKATRPPRLSEPTKGRRALSTARDDGQERLPHSTFDVERSMFDVQIVASEITTKPPYHVEIMYTGQEC
Ga0190345_1031489Ga0190345_10314892F071990SGGAADSDVLTMLWDVTADGGNTLVESFKLWMSSNGFDQAGSVCKLQALSGADQGSPSNTENYIVSATPASYTWGDMPESEPGSQNVWPSDEGTSMTLSTTSDDAIMWAMYLAIASGETTGTYKGTDSGYELQFSFKYAYS
Ga0190345_1031931Ga0190345_10319312F064356VNPEFTELGDGNYKLTFTPNVNGVWYVNVTHPTYFPWGKNDDIYVNETDLTEVYDIVRKTLGLVHHNMYIDQATYDEYGNMIGARVRIYDDAANVGTDIGVIETYRIEADSEACGQFSYWLQVKV
Ga0190345_1036928Ga0190345_10369282F045994MDKKLLTDDIIIGKLEKDGFMEEPDGPWLLEYIEEQHGGKLDKTSGYVDDRHSLKIYSESTYDG
Ga0190345_1040879Ga0190345_10408791F025922MYASQSVYANGEVLYRVQTMGSTTTFTSTDIFEMGHLDVIDVVDDVPAVAVTLNTNDWGDVRTFALLAQVSDAKLNMDETATNANANLVVVSGTQMAETSTYLHGACLADFAIVCGNLPGIAMWSPIQSECDMGTLSDNIDQTMFMDDVYINRVEFNYSTGAEATENYTGETDNKMWL
Ga0190345_1042101Ga0190345_10421011F094688TAQYVKATYSGKSILKEYSQIETLRVIEIHDELEPYRITRLQGPWIQGHYELNSKVSDKFTFDPFENIHNSYYEKSGGISISSSLVDLGSGSITYLISPNLPIIEVPTLYLEGSVSHIYVSGENEDFYEVSYISNHTGYLGTSEIDLRGRERFFLKLQGGSFSALHVGCDLGSVYNPLPWAVPNG
Ga0190345_1045759Ga0190345_10457591F050310MASMQSFIVGIVLVGVTLVIGIFISAEIADQMTDDSAEQNAAEDLVTALSGGTAWITILVVVGFATIVLGMLTSGLGRSADMAGPVY
Ga0190345_1048984Ga0190345_10489842F000898MNIYKLVFDTEAIGKQVLIDNNVWEEVTEEGVTFMKCINGTKGVVNIGKVVKIPGTYDPDGHEITPPVYYPGWAYDFISTDVIDLSKYEVYPGDKSVHSFAGYPRGAEIPRI
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