Sample 3300021481

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Sample 3300021481

3300021481: Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-10m

Overview

Basic Information
IMG/M Taxon OID	3300021481 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129141 \| Gp0217443 \| Ga0194034
Sample Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-10m
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	32613146
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → anoxic water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Canada: Ontario
Coordinates	Lat. (^o)	49.663	Long. (^o)	-93.723	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003038	Metagenome / Metatranscriptome	511	Y
F004953	Metagenome / Metatranscriptome	417	Y
F006265	Metagenome / Metatranscriptome	377	Y
F018700	Metagenome / Metatranscriptome	233	Y
F025233	Metagenome / Metatranscriptome	202	Y
F033356	Metagenome / Metatranscriptome	177	Y
F038206	Metagenome / Metatranscriptome	166	Y
F045581	Metagenome / Metatranscriptome	152	Y
F047578	Metagenome / Metatranscriptome	149	Y
F102527	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0194034_100186	Not Available	1716	Open in IMG/M
Ga0194034_100216	All Organisms → Viruses → Predicted Viral	1636	Open in IMG/M
Ga0194034_100810	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
Ga0194034_100995	Not Available	1065	Open in IMG/M
Ga0194034_107000	Not Available	593	Open in IMG/M
Ga0194034_107924	Not Available	570	Open in IMG/M
Ga0194034_107938	Not Available	569	Open in IMG/M
Ga0194034_109109	Not Available	545	Open in IMG/M
Ga0194034_109870	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	531	Open in IMG/M
Ga0194034_110056	Not Available	528	Open in IMG/M
Ga0194034_110221	Not Available	525	Open in IMG/M
Ga0194034_111919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0194034_100186	Ga0194034_1001863	F025233	MRMFILQLHSGFIVATDDVDGRTIYSVPSKNIEYAYKSEIIDFMQTGVFIYDETLDDKVK
Ga0194034_100216	Ga0194034_1002163	F047578	MKAICIDSSKKPSKILQSEWIVEGETYTITKVIKMGLQDGKYGVLLKEVQLSADSFPYEYYDADRFLPLDILTEVREEEAVKEADLELI
Ga0194034_100810	Ga0194034_1008102	F004953	MSENTMMLVQATWQEKQTFRMIPISGSCPYVECIFDPGTKVFVVISKIKRTSLQMLPKLDEYGQPVTGAKGRKEERNKIDVFQEFYIEDKTAVKDLIKLFAVNSAKFDYGQFMDVPEDGPVEEAK
Ga0194034_100995	Ga0194034_1009952	F003038	IEGARHLILHVETEPIEGFDGFFIDKDDESQGRYGGQIGRVKASQYAFADGETKSGIKIQRDRSILIFLQNLCNTLGINDWFREQDGKHETVEDFVSAFSKSAPYKEKFLEFCVAGKEYESKSGYTNYDMWLPKAENKKYAMAEVEAGKVMTYDEVKHLKKIEVKDVKAFGDDDSMFGSSKTSSDFSLD
Ga0194034_107000	Ga0194034_1070002	F033356	QLTSNSSINPLQEDILPQEDQRPKTHLQLQYITQTNRLPFTEAHQEQYSANVTINPFKLLEIHNKLIVLEGQLSHLTDKVAEIVVEIHKMTHQN
Ga0194034_107924	Ga0194034_1079241	F018700	MIHVRVTLQIAPGRQADAVARAHKDVTLWKEVTGHTFRVSVVTTGTLGRLCYSADYESMVAMEVIVAKVNAHPDWIAHQAKINQTVRDGTTPFVPNTAHDEYWRDA
Ga0194034_107938	Ga0194034_1079382	F006265	MDKSVDKYIFINNMSEDQPIYERQMEPSNVTDHNIRLIVQKYYTPQVDESSKGIILRFVPNRGNVLPEALVWFEKGKKGFVNKPLSQNVWMMVDCDLRPLHELLHKHFHLNEGDFNITRTTLSSIAYETISEWAKQT
Ga0194034_109109	Ga0194034_1091092	F045581	MSPLTLTGSDELTQFYNKKFYFSYSSINKLLFSPRMFYSHYVLNQREDSTDAHLVTGRVLHCLLLDPHTFDDQFMLLPGKLPSGNNKIIIDNIFKYHCTVGNDSLN
Ga0194034_109870	Ga0194034_1098702	F102527	FSNDPNLQMLDPKKYGTGIKGAEAERLREYAGGVKDRSYVYLGEPGAVSPESGLGVNRYRAESQNLYDITKDPLFFRALARELNRTPFTAKVNAGIMSPLQEANDYERLVKEYGYEGMINPNASKPMGIMFRPTPVKLNNQR
Ga0194034_110056	Ga0194034_1100562	F038206	MFLPIQFRDKEGPYTEHLNVTHITRVSFVNQMNPDAGTKIHLRTGEVLTTPMTLDIISEKIDDCWKSAATLVIFNVLAEKAKIMSKDDEDVD
Ga0194034_110221	Ga0194034_1102211	F018700	IHFRRSVQIAPGRQADAVARAHEWVTLWKEATGTDVQVSVVTTGTLGRLCFSGDFESMGAWEADDAKGFGSPKGSALNAKQDQEERDGTAPYVPNTWHDEFWRDA
Ga0194034_111919	Ga0194034_1119192	F018700	APGRQADAVARAHESAAIFKEAAGVTVRVSVVTTGTLGRLCFSSDYENMGAREAAVAKVQADPRQDAFNARHEQELRDGTSMFVPGTTHDEYLRDA

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