3300021338: Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP2 #1

Overview

Basic Information

• IMG/M Taxon OID: 3300021338
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0131207 | Gp0238777 | Ga0213839
• Sample Name: Coastal seawater microbial communities from Marineland, Florida, United States - SWPA TP2 #1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 440483660
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coastal Seawater Microbial Communities From Marineland, Florida, United States
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Marineland, Florida, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Florida
• Coordinates
  • Lat. (^o): 29.6703
  • Long. (^o): -81.2145
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028441	Metagenome / Metatranscriptome	191	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0213839_1030838	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2012

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0213839_1030838	Ga0213839_10308381	F028441	MTLKQLIKLEDKAKEVWVISPTLHYDTENKDFSEIVSVNLGEKTKYKYIVPATSTVTKNIKLYKKMYKVSEDEINQNFLLLPESEFNPFIMEIAIYNASSKKCIACAAPATEDSDDVIKFNAETSESLANAFKKLWKKYKRSNP