3300021301: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 3, Penicillin and Streptomycin

Overview

Basic Information

• IMG/M Taxon OID: 3300021301
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0242243 | Ga0214510
• Sample Name: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 3, Penicillin and Streptomycin
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 140324133
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4149
  • Long. (^o): -119.841
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046107	Metagenome / Metatranscriptome	151	Y
F086383	Metagenome / Metatranscriptome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0214510_1000952	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium	6881
Ga0214510_1001617	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	5536
Ga0214510_1008093	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	2715
Ga0214510_1050381	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315	863
Ga0214510_1050513	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	861
Ga0214510_1055084	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	806
Ga0214510_1061036	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	742
Ga0214510_1074296	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315	629

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214510_1000952	Ga0214510_10009521	F086383	LTLHIALDGIYVNVNHIMIEKLAEYLTQKSYTVKTIFPMQNEMMQHILTSYDLTISEKALLSALDRSIIYNHQNFSNFDIVLWNTSIISSYAFHTTAEVKASFIKSINRFFPAMDIIIVVQPLQENNQILDKFSSLIQQFDNVYPVNFVDGGVDLAFREAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNNCKDYAKEEQNRLNFRNYYNRYKDTMSEAQKGALGSRGANLHAHANADHEVEARLISNEKKRLGL
Ga0214510_1001617	Ga0214510_10016171	F086383	MTLHIALDGIYVNVNHLIVQKLVEYLTQKSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKDAIETIFEVLPTCNWCGRLFTKTTHFKKYCSSNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214510_1008093	Ga0214510_10080931	F046107	KKVIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDNPVLSLCLISTTSTLLVKFGNLEYLSDNSSNELLIIGIVLVKNSAKPTIFGTGDSDEPLKS
Ga0214510_1050381	Ga0214510_10503811	F086383	NVNHIIVQKLVEYLTQKSYAVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNEVIKQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214510_1050513	Ga0214510_10505131	F046107	MYFGKLYYAGIFPFLTNKKVIKPKSNIFKIDSMVFTKLFLDSSFIELLGRDSPFVEIDDDPVLSLCLISTTSTLLVKFGNLEYLSNNSLNEQLMIGIALVKNL
Ga0214510_1055084	Ga0214510_10550841	F046107	KNKKARKYYVFRQVVLCGNFPFLTNKKIIKPRSNIFKIDSVVSSKLSPDSSFIELLRRDSPFVEIDDDPVLSLCLISMTSTLLVKFGILEYLSNNSSNELHMIGIALVKNSTKPTIFGTVTGEFR
Ga0214510_1061036	Ga0214510_10610362	F046107	YVFRQVVLCGNFPFLTNEKKKKIKPKSKIFKIDSVVSTELFPDSSFIELLRRDSAFVEMDDDPALSLCLINATLTLLVKFGSLEYLSINSSNELLMIGITLVKKLRNSAKPTIFWNMVTQMNL
Ga0214510_1074296	Ga0214510_10742961	F086383	NHENFSNFDIVIWQTSILSSYAFHTNPEVKPSFIKTINKFVPNMDIIVVVQPLGDKNQIIQKFNDVIQQFDNVYPVNFVNGAIDLTFKETIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL