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Sample 3300021295
3300021295: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 3, Penicillin and Streptomycin
Overview
Basic Information
IMG/M Taxon OID 3300021295 Open in IMG/M GOLD Reference Gs0118397 | Gp0242255 | Ga0214522 Sample Name Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen10, Rep 3, Penicillin and Streptomycin Sequencing Status Permanent Draft Sequencing Center DOE Joint Genome Institute (JGI) Published? N Use Policy Open
Dataset Contents
Total Genome Size 136952975 Sequencing Scaffolds 6 Novel Protein Genes 6 Associated Families 1
Dataset Phylogeny
Taxonomy Groups Number of Scaffolds All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix → Neocallimastix californiae 1 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 2 Not Available 1 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix 2
Ecosystem and Geography
Ecosystem Assignment (GOLD)
Name Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea Type Host-Associated Taxonomy Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
Alternative Ecosystem Assignments
Environment Ontology (ENVO) Unclassified Earth Microbiome Project Ontology (EMPO) Host-associated → Animal → Animal distal gut
Location Information
Location USA: California Coordinates Lat. (o ) 34.4149 Long. (o ) -119.841 Alt. (m) N/A Depth (m) 0 Location on Map
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Associated Families
Family Category Number of Sequences 3D Structure?
F046107 Metagenome / Metatranscriptome 151 Y
Associated Scaffolds
Scaffold Taxonomy Length IMG/M Link Ga0214522_1009582 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix → Neocallimastix californiae 2928 Open in IMG/M Ga0214522_1028518 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 1501 Open in IMG/M Ga0214522_1061396 Not Available 739 Open in IMG/M Ga0214522_1067582 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix 663 Open in IMG/M Ga0214522_1081954 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix 524 Open in IMG/M Ga0214522_1084048 All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2 507 Open in IMG/M
Sequences
Scaffold ID Protein ID Family Sequence
Ga0214522_1009582 Ga0214522_10095824 F046107 MYFSKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDEDRVLSLCLISTTSTLLDKFDILQYLQIIAQTNYL Ga0214522_1028518 Ga0214522_10285182 F046107 NKKAQKNTMYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGRDSPFVEIGEEPVLLLCLISTTSTLLVKFGILQYLSNNSLKRTT Ga0214522_1061396 Ga0214522_10613961 F046107 MYFGKLYYAGIFPFLTNKKEIKPSSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFSILQYL Ga0214522_1067582 Ga0214522_10675821 F046107 KKIKKLENTMYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSKLLVKFGILQYLSNNSSNELLMIGIVYYKKNYTLLVSVIRLCPLLL Ga0214522_1081954 Ga0214522_10819541 F046107 MYFGKLYYAGIFPFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELQGRDSPFVEIDDDPVLSLCLISTTSTFLDKFGNLQYLSNNSSNELLMIGIA Ga0214522_1084048 Ga0214522_10840482 F046107 MYFGKLYYTGNFPFLTNKKEIKPRSNIFKIDSVVSTKLSQDSSFIELLGRDSPFIEIDDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVNFS
