3300021288: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3, Penicillin and Streptomycin

Overview

Basic Information

• IMG/M Taxon OID: 3300021288
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118397 | Gp0242244 | Ga0214511
• Sample Name: Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Reed Canary Grass, Gen5, Rep 3, Penicillin and Streptomycin
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121759160
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea
• Type: Host-Associated
• Taxonomy: Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.4149
  • Long. (^o): -119.841
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046107	Metagenome / Metatranscriptome	151	Y
F074260	Metagenome / Metatranscriptome	119	Y
F086383	Metagenome / Metatranscriptome	110	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0214511_1000147	Not Available	16891
Ga0214511_1000168	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter	15478
Ga0214511_1010340	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1981
Ga0214511_1013813	Not Available	1713
Ga0214511_1014062	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	1698
Ga0214511_1016328	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1567
Ga0214511_1021964	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	1314
Ga0214511_1025245	Not Available	1203
Ga0214511_1027510	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Piromyces → unclassified Piromyces → Piromyces sp. E2	1136
Ga0214511_1038352	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. YE315	905
Ga0214511_1047499	Not Available	770
Ga0214511_1068730	Not Available	567
Ga0214511_1072347	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214511_1000147	Ga0214511_100014723	F086383	VTLHIALDGIYVNVNHIIVQKLVEYLASKSYTVKTIFPLEDEIMQSILNSYDLTFSERALLAALDRSINWNHENFSNFDIVIWQTSILSSYAFHTNPEVKPSFIKTINKFVPNMDIIVVVQPLQEDNQIIQKFNDLIQQFNNVYPVNFVRGGVDLTFKEAIETIFEVLPTCNWCGRLFTKTIHFKKYCSNKCKDYAKEEQNRQNFRNYYKRYKDTMSEAQKGALGSRGANLHA
Ga0214511_1000168	Ga0214511_10001689	F074260	MAEKKKTAKKWDFAKDGKPFDELPIIVKRNRKNLYEYIRTGELP
Ga0214511_1010340	Ga0214511_10103401	F046107	MYFGKLYYAGIFPFLTNKKVIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSPFVEIDDDPVLSLCLINTTSTLLVKFGNLEYLSNNSSNELLMIGIALVKNSVKPHNFWNS
Ga0214511_1013813	Ga0214511_10138132	F046107	MYFGKLYYAGIFPFLTNKKEIKPSSNIFKIDSVVSTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFSI
Ga0214511_1014062	Ga0214511_10140621	F046107	MYFGKLYYAEIFPFLTNKNEIKPRSNIFKIDSAVFTKLSPDSSFIELLGQDSSFVEIDDDPVLSLCLISTTSTLLDKFDILQY
Ga0214511_1016328	Ga0214511_10163281	F046107	MEIIEKMKLEIIHILKKLENTMYFSKLYYAGIFSFLTNKKEIKPRSNIFKIDSVVSTKLSPDSSFIELLGRDSSFVEIDDDPVLSLCLISTTSTLLVKFGILQYLSNNSSNELLMIGIALVK
Ga0214511_1021964	Ga0214511_10219641	F046107	NKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGRDSPFVEIGEEPVLLLCLISTTSTLLVKFGILQYLSNNSLKRTT
Ga0214511_1025245	Ga0214511_10252451	F086383	SYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNNQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214511_1027510	Ga0214511_10275102	F046107	MYFGKLYYAGIFPFLSNKKEIKPGSNIFKIDSVVSTKLSLDSSFIELLGQDSPFVEKDDDPVLSLCLISMTSTLLDKFGIALVKNSVNFWNM
Ga0214511_1038074	Ga0214511_10380741	F086383	MTLHIALDGIYVNVNHIIVQKLVEYFASKSYAVKTIFPLEDEIIQSILNSYDLTFSEKALLTALDRSITWNHQNFSNYDIVIWQTSIISSYVFHTNENVKPSFIKSINKFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYDGVDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSKNCKDYAK
Ga0214511_1038352	Ga0214511_10383521	F086383	MTLHIALDGIYVNVNHLIVQKLVEYLTQKSYTVKTIFPLQDESIQSILAGYDLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDQNVKPSFIKSINRFVPNMDIIVVVQPLDEDNQIIQKFNDLIQQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRQNFRNYYKRYKDTMSEAKKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214511_1047499	Ga0214511_10474992	F086383	DLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEEKNQIIQKFNEVIKQFDNVYPVNFVYGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRNYYKRYKDTMSEAQKGALGSRGANLHAHANSDHEVEARLISNEKKRLGL
Ga0214511_1068730	Ga0214511_10687301	F086383	DLTFSEKAMIAALDRSITWNHQNFSNYDIVIWQTSILSSYVFHTDESVKPSFIKSINRFVPNMDIIVVVQPLEENNQIIQKFNDFTKQFDNVYPVNFVNGAIDLTFKEAIETIFEVLPTCNWCGRLFTKTTHFKKYCSRNCKDYAKEEQNRLNFRSYYKRYKDTMSEAQKGALGSRGANLHAHANSDH
Ga0214511_1072347	Ga0214511_10723471	F046107	MYFSKLYYAGIFPFLTNKKEIKPRSNIFKIDNVVSTKLSPDSSFIELLGQDSSFVKIDADPVLSLCLISTTSTLLDKFGNLQYLSNNSSNELLMIGIALYYFVFNRIE