3300021261: Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hamp_Cave_2

Overview

Basic Information

• IMG/M Taxon OID: 3300021261
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0131209 | Gp0238793 | Ga0213896
• Sample Name: Switchgrass-associated microbial communities from reclaimed mine lands soil in West Virginia, United States ? Hamp_Cave_2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 10838498
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Switchgrass-Associated Microbial Communities From Reclaimed Mine Lands Soil In West Virginia, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → land → soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.458
  • Long. (^o): -79.073
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017849	Metagenome	238	Y
F083339	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0213896_100489	Not Available	641
Ga0213896_100519	Not Available	632

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0213896_100489	Ga0213896_1004892	F017849	MVEGAKSWLRDNSTLIYFLIAQFIAIGAFAASGIAYMVKLETRVAIMETRGAEYTVARMEEMKLKIAGLEHQIEKNEKSIDRIVDVMTKKLNISP
Ga0213896_100519	Ga0213896_1005191	F083339	ISLPSDFATMASIRDATSGEMLRLKDAWSGHWVGRQSSAWQEGAVVGAVGQVCTSYRLTGDCIEFLPHPILPDPPDPAWVPQVVIMEWYAKPKPLLLPSDTNPVLEQLYAVYLWGVLKHGALFELDDDRAAQADAQWQQVVTRANLWKQQSDYSGAPLRSELVSFG