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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021110 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0054251 | Ga0214203 |
| Sample Name | Freshwater microbial communities from Trout Bog Lake, WI - 08JUN2009 epilimnion |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 4004561 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 15 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | 1 |
| Not Available | 14 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → epilimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002908 | Metagenome / Metatranscriptome | 521 | Y |
| F005477 | Metagenome / Metatranscriptome | 399 | Y |
| F014608 | Metagenome / Metatranscriptome | 261 | N |
| F034043 | Metagenome / Metatranscriptome | 175 | N |
| F038099 | Metagenome / Metatranscriptome | 166 | N |
| F044899 | Metagenome | 153 | N |
| F054800 | Metagenome | 139 | Y |
| F055458 | Metagenome / Metatranscriptome | 138 | N |
| F056315 | Metagenome / Metatranscriptome | 137 | N |
| F065413 | Metagenome / Metatranscriptome | 127 | N |
| F067399 | Metagenome / Metatranscriptome | 125 | N |
| F070904 | Metagenome / Metatranscriptome | 122 | N |
| F076017 | Metagenome / Metatranscriptome | 118 | N |
| F081269 | Metagenome / Metatranscriptome | 114 | N |
| F091305 | Metagenome | 107 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214203_10027 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | 4754 | Open in IMG/M |
| Ga0214203_10101 | Not Available | 1822 | Open in IMG/M |
| Ga0214203_10259 | Not Available | 1153 | Open in IMG/M |
| Ga0214203_10341 | Not Available | 1009 | Open in IMG/M |
| Ga0214203_10349 | Not Available | 1004 | Open in IMG/M |
| Ga0214203_10423 | Not Available | 918 | Open in IMG/M |
| Ga0214203_11056 | Not Available | 620 | Open in IMG/M |
| Ga0214203_11060 | Not Available | 618 | Open in IMG/M |
| Ga0214203_11138 | Not Available | 600 | Open in IMG/M |
| Ga0214203_11140 | Not Available | 599 | Open in IMG/M |
| Ga0214203_11223 | Not Available | 575 | Open in IMG/M |
| Ga0214203_11254 | Not Available | 570 | Open in IMG/M |
| Ga0214203_11333 | Not Available | 554 | Open in IMG/M |
| Ga0214203_11354 | Not Available | 550 | Open in IMG/M |
| Ga0214203_11471 | Not Available | 532 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214203_10027 | Ga0214203_100271 | F056315 | MSLMEPLRQAPQVIPQIILSLCAISIVTFNKLSEVMTPFYGGNKNRPRINVTTGDKTFNWLFDTGAAVTCMNANSFKEAFSGK |
| Ga0214203_10101 | Ga0214203_101011 | F002908 | MANNDDIQVDLNQDQDGQVVQNVPAGAQTTLAFRVDQSKIPEFWGQKSKDTVTAIVFIRKIEDLARTNHWTDTATYANVANGFKGFAREWLFATADMLDWTDAQLTWTNLKPRFQKQFATQTDDKQIIEGLSNLAMGPTETTGELLARITNLMVIIKESYAAYNNKAPEPPTD |
| Ga0214203_10259 | Ga0214203_102591 | F091305 | VRGYDILSDIILXYVTGGLFHYKHDTSDDRAYSLNKDDYPGLPLFTMKPPASKRRYLNEVFLLVLDDLPTWRSMNTYAVDTEAQLKLLAAAEHQAIPATSSGPAFMALPKLSKTLVSYIVGLMVTTPYFRGSCDERAKGLAEQHVTSTLASLNTLNGARYKTFLQETIGGWYSLFPEVRAAPRAGRASLAGEVGGDVEEPEEGEEGFIGGEVPVL |
| Ga0214203_10341 | Ga0214203_103412 | F065413 | NSADAENGVEPFVALAENVVAQLGDAVRVVVVQAFEAIGSEAARCLDFRMEVVATVAVGVATVDELDVALAVLTDKTVQQGRGGFDLRCQLAERCGFERC |
| Ga0214203_10349 | Ga0214203_103491 | F014608 | MQINAQIGAQIRQSHRNKANARGFFSKTYTPCYRTFVASYYFFFILELLVLKINPAIAVPDPAPTLLDSNFVEPPNLQLLFRPSGKYAASTHFIHIRVPFNFSQLLATPDNIFFQYHNYIELWPEPFRTQVEEIAEISRSCIADKLNDFIDILDALPQNEVITRDKRFLDLIALGMSTAALTLSTFNSAKISKLETQIASSNKRIDHLVDITSLHEKHFKAVDQKLDDVADKVALMLKVNKVHFAKMTDFMEQKFGTAVAISERLIHTAYNNKLSPGALHH |
| Ga0214203_10423 | Ga0214203_104231 | F070904 | SQEHATNRIKIQEARNPDRRIQGIFFPTILPVVPQKNIDLSDLHWMKHRSTSPPAWASQHHSAYTFAKIFTPNFANKIRHAHSKTSHIFPADDLDFKRTIEIRNHLELRSANEKNGEQIIKISETRSGFHSQDRTSMCIYIHRRTLKKLLSACVRALNLVLIPINDENDTEYTCFDSKTIADEEAELNYVIDIAKPTPRSKNVRMIHIFMETMFNDIIVGSIDIPWHQFDIFTRELQMFLQTPGFPATFY |
| Ga0214203_11056 | Ga0214203_110561 | F044899 | GRKRVLNSDDDDIEASADGLFSEGGSLQEAGGGSPQTSDSAVKKRKVNRHGLVTLTNGVVSMRELGLSIAVPSKCRDDDALTLFNATLSWGQAYALCTLVMCGKDHPVEKAKDMETRMKIMYSAQPYSISEEMLNEILEADPEQRLPYLHGISKSALQKLRYALYGQVGNLFNEKVFTKTGVQPSKMVKLHLGLEDLVPERGLMDV |
| Ga0214203_11060 | Ga0214203_110601 | F076017 | NETTLVDFQKRRKQVNWIQPHLNPQRLLATTIANIKHQDPLSLTWFTTHEEPLPIWALYSHTAYTFAKTFNPLMCNAPRFKVTETSRSFPADDVESNRQIQIKTVDNCPTDNIVKISESYRGYRSLTSVENCIFIRKQSIDKLLQVCVQTLNTLLLPPKEDLNLPFGCYASRMLKDHSSGMSYLVDITREPMQEHGFRFVRIFQQ |
| Ga0214203_11138 | Ga0214203_111382 | F054800 | MATVTPATITPSWAMTYDNLTTMVLQYLERSDQATINAIPTFITLAEFEIAQEIKTLGQMAVATATMSANNP |
| Ga0214203_11140 | Ga0214203_111401 | F038099 | FGQKNKDTITAIVFIRKIEDLARTNRWTDATTYANVANNLKGFAREWLFATAEMLDWTPAQLTWTNLKPRFQRQFATQTDEKMIMEGLSNLAMKPGESTGELLARITNTMVIIKESYASYENKPPAPANFDVNNGFTMPVCRQWKDDVLNNTQQFLKMQLFRAALTPELRKVVAQTNPNNMTLDDMYQIATDTQREAGP |
| Ga0214203_11223 | Ga0214203_112231 | F067399 | VVNVVVNVDNFVVGFDVERMIVDVTHTDGDFGVGTLRIDVVVSQGGERGVVRPEIGYVAVHGGARGVGVTKSIVCVKLLDDDTQSALK |
| Ga0214203_11254 | Ga0214203_112541 | F034043 | TKKKTFYGDLATSNDWTVFFELPELKAFSIKHFPQDICQTTKQVDAFVISRSRKICFVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQLFGFTSKELKALVDECSLVSRRSSYYIWLNRFHQTFIPFQMVQVDIESYQSIAVV |
| Ga0214203_11333 | Ga0214203_113332 | F055458 | MSNSLTNIVNKTMATFIKGSMCEILALISAQQKEMIKELEKFPLSKRILVEDEVDEANDKLIELLTELQLTFVIETETEDS |
| Ga0214203_11354 | Ga0214203_113541 | F081269 | MEALPVAVSGSLYKSALTMIKELKKLVIKLTREGVSCSPSVIQMFDETKRWFMERIRVHFADSQKRYLQWRWRAAEKMFLQFKDGKPLTSVAATVINVAASPTRRPRKRVKVA |
| Ga0214203_11471 | Ga0214203_114711 | F005477 | SRTQVEEVAELSRSVLQDKYNDFKNQLDALPQYEVVTRDKRFLDLVSLGMSTAALTLSTFNTVKISHLETQIVNNNKRLDHLVDITALHEQHFKAVDQKIDDMADLLVKILRYNKVKFAKLTDLMEQKFSTAVAISERLIHTAYSNRLSPGALDHEALIAVVKYVNDIAQNSDMLSF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |