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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300021109 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0053458 | Ga0214185 |
| Sample Name | Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2008 epilimnion |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 8783725 |
| Sequencing Scaffolds | 4 |
| Novel Protein Genes | 5 |
| Associated Families | 3 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 4 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → epilimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005025 | Metagenome / Metatranscriptome | 414 | Y |
| F078137 | Metagenome | 116 | N |
| F088135 | Metagenome | 109 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214185_100031 | Not Available | 4235 | Open in IMG/M |
| Ga0214185_100530 | Not Available | 1146 | Open in IMG/M |
| Ga0214185_101442 | Not Available | 804 | Open in IMG/M |
| Ga0214185_103752 | Not Available | 542 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214185_100031 | Ga0214185_1000313 | F078137 | MRQIFVDSRDRVSGTTCDFTIQLPETLTIDGGNHQARIDNLRIPLNVPTITTGINDTIQVKLGAQTYTITLAQGNVDGPTLASNIQGLLQATAPGSWSVSYDVNNISMTISGSNPFTITGGTYAAQLLSRPYTQTSNSYRFSYVPVAGIDMMYLSSSNFSTLDTVGPGGAHDTLMCAVVTQAFGTVMDTNMPTDAWFKVPQMTTQTLSFTLRDRSYNVLSIVPNISFVLLID |
| Ga0214185_100530 | Ga0214185_1005303 | F005025 | MDKKTVKGIADKEAKKEVKSHEKRMHGKRMKAGGPTVEDRFKFGRNESRAKNQGN |
| Ga0214185_101442 | Ga0214185_1014421 | F088135 | IKTSSMATSIAPNIASGTTGSTSLVFNLRYASVKAMIAIFGGNAAAKSANKLMDSFDITSNNGDFQFNIGGVNYPQKSLSTLNNKAGIMMELRRAMGSILNNNVSLSVNVNEFNITDSSANPTTVVLPGKFWVAQNLQKLTVNQKAFFTGVSTQLAPINLNINIGTATTQAYTPLLVLLYDAIIEIDPATKQIIMIQ |
| Ga0214185_102623 | Ga0214185_1026231 | F088135 | AANICSNLAAATNRKVASFVINNFEVCYNMIDMGQEVQNEIIRMNPKLRIKSSSFATSIAPNIASATSGSTSLVFNLRYASVKAILAVFGGTDTARSANKLFDSFDITSSNGDYQFNIGGVNYPQKSLSTLNNKGGLMMELRRAMGSILNNNVSLSVNFNEFNIADPAAAAPTSVVLPGKFWVAQNLQKLTVNQKAFFTGVSTQLAPINL |
| Ga0214185_103752 | Ga0214185_1037521 | F088135 | RIKSSSFATSIAPNIASGTIGSTSLVYNLRYASVKAILAVFGGNDTTQSANKLFDSFDITSSNGDFQFNIGGVNYPQKSLSTLNNKGGLMMELRRAMGSILNNNVSLSVNFNEFTIIDGGATTAVKPAKFWVAQNLQKLTVNQKAFFTGVSTQLAPINLNINIGTITTQAYTPLLILLYD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |