Sample 3300021059

Overview

Basic Information
IMG/M Taxon OID	3300021059 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0225667 \| Ga0210241
Sample Name	Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_8mM
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	85852507
Sequencing Scaffolds	10
Novel Protein Genes	11
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	9
All Organisms → cellular organisms → Eukaryota → Haptista	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007958	Metagenome / Metatranscriptome	341	Y
F074505	Metagenome / Metatranscriptome	119	N
F078160	Metagenome / Metatranscriptome	116	N
F082271	Metagenome / Metatranscriptome	113	N
F088418	Metagenome / Metatranscriptome	109	N
F098631	Metagenome	103	N
F104622	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F007958

Metagenome / Metatranscriptome

341

F074505

Metagenome / Metatranscriptome

119

F078160

Metagenome / Metatranscriptome

116

F082271

Metagenome / Metatranscriptome

113

F088418

Metagenome / Metatranscriptome

109

F098631

Metagenome

103

F104622

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210241_100111	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	62260	Open in IMG/M
Ga0210241_101237	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	20189	Open in IMG/M
Ga0210241_102519	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	9736	Open in IMG/M
Ga0210241_103618	All Organisms → cellular organisms → Eukaryota → Haptista	5162	Open in IMG/M
Ga0210241_104049	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	4105	Open in IMG/M
Ga0210241_107525	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	905	Open in IMG/M
Ga0210241_107756	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	852	Open in IMG/M
Ga0210241_108036	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	795	Open in IMG/M
Ga0210241_108507	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	711	Open in IMG/M
Ga0210241_108872	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	654	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0210241_100111

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

62260

Open in IMG/M

Ga0210241_101237

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

20189

Open in IMG/M

Ga0210241_102519

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

9736

Open in IMG/M

Ga0210241_103618

All Organisms → cellular organisms → Eukaryota → Haptista

5162

Open in IMG/M

Ga0210241_104049

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

4105

Open in IMG/M

Ga0210241_107525

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

905

Open in IMG/M

Ga0210241_107756

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

852

Open in IMG/M

Ga0210241_108036

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

795

Open in IMG/M

Ga0210241_108507

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

711

Open in IMG/M

Ga0210241_108872

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

654

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0210241_100111	Ga0210241_10011114	F007958	MGIDTTLPGDMGVFDTEGLGEGEPIWDRMCFFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRIEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWFINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQSEKDNSMKVGSRGCTVAQVREAQRECCNALINRGSGDARQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0210241_100111	Ga0210241_10011119	F007958	MGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRIEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWFINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQSEKDNSMKVGSRGCTVAQVREAQRECCNALINRGSGDARQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0210241_101237	Ga0210241_1012371	F078160	MHASSVEEQGEARTAKKAKHEEHIRVRARDGEEVTLSQDAARLMGTLKDLMDLATSEDGIYPMPT
Ga0210241_102519	Ga0210241_1025192	F098631	MSAGGTSWPLVGGALVSHGSLVRVRSSSDATSLSSLCSPSSRAECEFLSQVTAVQGWVLEYDQQCSAWHIFLFCFLRDVIIPSEYMEVISCIPTSLAFGDFLLANRRGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEEGSISGPQCVSQACRYRDFLRSLPVDAWLHHVFLPDPSMLPSFLLA
Ga0210241_103618	Ga0210241_1036181	F074505	RCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHGPHCTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSGRRMTHTAVRKST
Ga0210241_104049	Ga0210241_1040491	F104622	GTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDRVEEFQPLEDDAAQVA
Ga0210241_107525	Ga0210241_1075251	F082271	QRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAEASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVN
Ga0210241_107756	Ga0210241_1077561	F088418	MLATQHTDFESFTNALGTLPNQPPVPMACEPSPSPIDVDTKAIVQQVVDVLLKHSPSPAVHLEVLGRRWLALARNESVTKLTSTLLPAKVPAMNMRDKRAREVLELMPVTPDCPQVTIALLMSQASTHRSAADIRVLRRCGNRAVQLAEAGLKQPTSAMSKVVSAETIKALDAHRAAEAQ
Ga0210241_108036	Ga0210241_1080361	F082271	HDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREV
Ga0210241_108507	Ga0210241_1085071	F082271	QRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAI
Ga0210241_108872	Ga0210241_1088721	F082271	HDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLRSLRA

Scaffold ID

Protein ID

Family

Sequence

Ga0210241_100111

Ga0210241_10011114

F007958

MGIDTTLPGDMGVFDTEGLGEGEPIWDRMCFFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRIEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWFINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQSEKDNSMKVGSRGCTVAQVREAQRECCNALINRGSGDARQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ

Ga0210241_100111

Ga0210241_10011119

F007958

MGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRIEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWFINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQSEKDNSMKVGSRGCTVAQVREAQRECCNALINRGSGDARQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ

Ga0210241_101237

Ga0210241_1012371

F078160

MHASSVEEQGEARTAKKAKHEEHIRVRARDGEEVTLSQDAARLMGTLKDLMDLATSEDGIYPMPT

Ga0210241_102519

Ga0210241_1025192

F098631

MSAGGTSWPLVGGALVSHGSLVRVRSSSDATSLSSLCSPSSRAECEFLSQVTAVQGWVLEYDQQCSAWHIFLFCFLRDVIIPSEYMEVISCIPTSLAFGDFLLANRRGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEEGSISGPQCVSQACRYRDFLRSLPVDAWLHHVFLPDPSMLPSFLLA

Ga0210241_103618

Ga0210241_1036181

F074505

RCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHGPHCTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSGRRMTHTAVRKST

Ga0210241_104049

Ga0210241_1040491

F104622

GTLETLYLMFIALLLIPVTIAQTMFGFGGDNTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVDRVEEFQPLEDDAAQVA

Ga0210241_107525

Ga0210241_1075251

F082271

QRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAEASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVN

Ga0210241_107756

Ga0210241_1077561

F088418

MLATQHTDFESFTNALGTLPNQPPVPMACEPSPSPIDVDTKAIVQQVVDVLLKHSPSPAVHLEVLGRRWLALARNESVTKLTSTLLPAKVPAMNMRDKRAREVLELMPVTPDCPQVTIALLMSQASTHRSAADIRVLRRCGNRAVQLAEAGLKQPTSAMSKVVSAETIKALDAHRAAEAQ

Ga0210241_108036

Ga0210241_1080361

F082271

HDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREV

Ga0210241_108507

Ga0210241_1085071

F082271

QRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACISSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAI

Ga0210241_108872

Ga0210241_1088721

F082271

HDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLRSLRA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021059: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_8mM

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences