Sample 3300021058

Overview

Basic Information
IMG/M Taxon OID	3300021058 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0225674 \| Ga0210248
Sample Name	Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_32mM
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	113401672
Sequencing Scaffolds	12
Novel Protein Genes	12
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	11
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F025010	Metagenome / Metatranscriptome	203	Y
F053251	Metagenome / Metatranscriptome	141	N
F074505	Metagenome / Metatranscriptome	119	N
F082271	Metagenome / Metatranscriptome	113	N
F088418	Metagenome / Metatranscriptome	109	N
F090311	Metagenome / Metatranscriptome	108	N
F098631	Metagenome	103	N
F104431	Metagenome / Metatranscriptome	100	N
F104622	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F025010

Metagenome / Metatranscriptome

203

F053251

Metagenome / Metatranscriptome

141

F074505

Metagenome / Metatranscriptome

119

F082271

Metagenome / Metatranscriptome

113

F088418

Metagenome / Metatranscriptome

109

F090311

Metagenome / Metatranscriptome

108

F098631

Metagenome

103

F104431

Metagenome / Metatranscriptome

100

F104622

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210248_101973	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	13843	Open in IMG/M
Ga0210248_103521	All Organisms → cellular organisms → Eukaryota	6678	Open in IMG/M
Ga0210248_103524	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	6663	Open in IMG/M
Ga0210248_103867	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	5777	Open in IMG/M
Ga0210248_104986	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	3716	Open in IMG/M
Ga0210248_108683	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1328	Open in IMG/M
Ga0210248_108733	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1317	Open in IMG/M
Ga0210248_110647	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1037	Open in IMG/M
Ga0210248_111353	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	971	Open in IMG/M
Ga0210248_111798	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	936	Open in IMG/M
Ga0210248_111848	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	932	Open in IMG/M
Ga0210248_114906	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	766	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0210248_101973

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

13843

Open in IMG/M

Ga0210248_103521

All Organisms → cellular organisms → Eukaryota

6678

Open in IMG/M

Ga0210248_103524

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

6663

Open in IMG/M

Ga0210248_103867

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

5777

Open in IMG/M

Ga0210248_104986

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

3716

Open in IMG/M

Ga0210248_108683

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

1328

Open in IMG/M

Ga0210248_108733

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

1317

Open in IMG/M

Ga0210248_110647

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

1037

Open in IMG/M

Ga0210248_111353

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

971

Open in IMG/M

Ga0210248_111798

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

936

Open in IMG/M

Ga0210248_111848

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

932

Open in IMG/M

Ga0210248_114906

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

766

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0210248_101973	Ga0210248_10197313	F088418	LPNQPPVPMECEPSPSPIDVDTKAIVQQVVDVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKAPAMKMRDNRAREVLELMPVTPGCPQATIALLMSKASTHRSAADIKVLRRCGNRAVQLAEAGLKQPTSATSKVVSAETIKALDAHRAAEAQKNGEKRAWVRAEDVALLELHAGDLPMSTHHPALVN
Ga0210248_103521	Ga0210248_1035216	F053251	VAPTAKKAKREEQIRVRARDGEEVTLLRDAARLMGTLKDLMDLATSEDGIYPMPTITASTLQMVCKLNDPDYTWPSSDEPSLFQLFQLIEDALYIDAPIALKHIQRAIASQLNGKRAPELCALVGAGGDFDSAEEHAPPHVEPAFVPEGVEAPQQPASSTLPPEPLQQPSFSADAMEAALGLVDVATLAELK
Ga0210248_103524	Ga0210248_1035241	F098631	LLRPLRARPMSAGGTSWPLVGGALASHGSLVRVRSASDATTSLSSLCSPSSRAECEFLSQVTAVQGWVLEYDQQCSSWHIFLFCFLRDVIIPSEHMEVISCIPMSLAFRDILLANRCGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEDGSISGSQCVSQACRYRDFLRSLPVDAWLQYVFLPDPSMLPSFLLA
Ga0210248_103867	Ga0210248_1038671	F104622	VPMILMGWDNLVRPPLKMFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGGNTDMAMAVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGRVEEGVRG
Ga0210248_104986	Ga0210248_1049862	F025010	IVALGLATATIVIKFMDDVVFATIRMKEHFRVAHELLLCYMREIDFDPTRNLHMGNVFRRGGQDTLLSEARRNAAVFFRTSGGTPQLDGAKIPGDRITKNPKPDLKPNGKADDSSKKPCADFNAGRPCKKLKPDGSCVFAHRCNQFVADKGPGGYCFGVHARCTGCDYDAGKKLRAPAA
Ga0210248_108683	Ga0210248_1086831	F104431	MVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPGCQLPRKHKVCASRVCTRG
Ga0210248_108733	Ga0210248_1087332	F074505	RCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHGPHCTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSVRHTSTTLCCMSPYSP
Ga0210248_110647	Ga0210248_1106472	F025010	TYKLEAAGKSKATSYSVVLVRPETEAEFYEMCHLFVMTIVALGLASATIVHKFMDDVVFATVRMKEPFSVAHELLICYFREIDFDPARFLHMGNVFRRGGQDTLLSEARRNAAAFFRTCGANPQLDGAKYPGRDTKNLKSEIKPNGKHDDSSKKPCADFNAGRPCRTLKADGSCVFAHKCNQFVSDKGPLGYCLGPHARCTGCTYADDKKLKSPAK
Ga0210248_111353	Ga0210248_1113531	F090311	ATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVL
Ga0210248_111798	Ga0210248_1117981	F074505	TARANRTDGDAEAGAAEAEKIKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPQRTRRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0210248_111848	Ga0210248_1118482	F074505	MLATARANRTDGEAEAGAAEAEKSKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPHRTLRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0210248_114906	Ga0210248_1149061	F082271	HDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGW

Scaffold ID

Protein ID

Family

Sequence

Ga0210248_101973

Ga0210248_10197313

F088418

LPNQPPVPMECEPSPSPIDVDTKAIVQQVVDVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKAPAMKMRDNRAREVLELMPVTPGCPQATIALLMSKASTHRSAADIKVLRRCGNRAVQLAEAGLKQPTSATSKVVSAETIKALDAHRAAEAQKNGEKRAWVRAEDVALLELHAGDLPMSTHHPALVN

Ga0210248_103521

Ga0210248_1035216

F053251

VAPTAKKAKREEQIRVRARDGEEVTLLRDAARLMGTLKDLMDLATSEDGIYPMPTITASTLQMVCKLNDPDYTWPSSDEPSLFQLFQLIEDALYIDAPIALKHIQRAIASQLNGKRAPELCALVGAGGDFDSAEEHAPPHVEPAFVPEGVEAPQQPASSTLPPEPLQQPSFSADAMEAALGLVDVATLAELK

Ga0210248_103524

Ga0210248_1035241

F098631

LLRPLRARPMSAGGTSWPLVGGALASHGSLVRVRSASDATTSLSSLCSPSSRAECEFLSQVTAVQGWVLEYDQQCSSWHIFLFCFLRDVIIPSEHMEVISCIPMSLAFRDILLANRCGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEDGSISGSQCVSQACRYRDFLRSLPVDAWLQYVFLPDPSMLPSFLLA

Ga0210248_103867

Ga0210248_1038671

F104622

VPMILMGWDNLVRPPLKMFLKGEGGTLETLYLMFIALLLIPVSIAQTMFGFGGGNTDMAMAVVGAMDMVAGDVAATADETAEEEQGGGEGAGAVGRVEEGVRG

Ga0210248_104986

Ga0210248_1049862

F025010

IVALGLATATIVIKFMDDVVFATIRMKEHFRVAHELLLCYMREIDFDPTRNLHMGNVFRRGGQDTLLSEARRNAAVFFRTSGGTPQLDGAKIPGDRITKNPKPDLKPNGKADDSSKKPCADFNAGRPCKKLKPDGSCVFAHRCNQFVADKGPGGYCFGVHARCTGCDYDAGKKLRAPAA

Ga0210248_108683

Ga0210248_1086831

F104431

MVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPGCQLPRKHKVCASRVCTRG

Ga0210248_108733

Ga0210248_1087332

F074505

RCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHGPHCTTRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSVRHTSTTLCCMSPYSP

Ga0210248_110647

Ga0210248_1106472

F025010

TYKLEAAGKSKATSYSVVLVRPETEAEFYEMCHLFVMTIVALGLASATIVHKFMDDVVFATVRMKEPFSVAHELLICYFREIDFDPARFLHMGNVFRRGGQDTLLSEARRNAAAFFRTCGANPQLDGAKYPGRDTKNLKSEIKPNGKHDDSSKKPCADFNAGRPCRTLKADGSCVFAHKCNQFVSDKGPLGYCLGPHARCTGCTYADDKKLKSPAK

Ga0210248_111353

Ga0210248_1113531

F090311

ATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVL

Ga0210248_111798

Ga0210248_1117981

F074505

TARANRTDGDAEAGAAEAEKIKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPQRTRRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA

Ga0210248_111848

Ga0210248_1118482

F074505

MLATARANRTDGEAEAGAAEAEKSKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPHRTLRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA

Ga0210248_114906

Ga0210248_1149061

F082271

HDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGW

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021058: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P3_32mM

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences