3300021055: Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos C3

Overview

Basic Information

• IMG/M Taxon OID: 3300021055
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0224410 | Ga0206226
• Sample Name: Subsurface sediment microbial communities from Mancos shale, Colorado, United States - Mancos C3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 96621018
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2
Not Available	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Colorado
• Coordinates
  • Lat. (^o): 38.96
  • Long. (^o): -106.99
  • Alt. (m): N/A
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001506	Metagenome / Metatranscriptome	681	Y
F002347	Metagenome / Metatranscriptome	568	Y
F022276	Metagenome / Metatranscriptome	215	Y
F025377	Metagenome	202	Y
F096759	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0206226_1000505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	3530
Ga0206226_1001616	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1452
Ga0206226_1003352	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1000
Ga0206226_1005552	Not Available	806
Ga0206226_1008408	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	687
Ga0206226_1014526	All Organisms → cellular organisms → Bacteria	566
Ga0206226_1019425	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0206226_1000505	Ga0206226_10005055	F001506	MNQILYKNRCRCNEEFSLSKKRKSVSRSEGKPIQYPKSNEILSKTFQIKYEKKLSLIAKLVLNSFQNKYIYYAIDDILYLFELNKNERENLLAILYSPILSLQNNYSVNFFDIWIKEIYIDEIFKSNKFLLTDSQTSKQFSYITIRLFYKTKVPLKKQESLW
Ga0206226_1001616	Ga0206226_10016161	F022276	MGGVLALALAIGIVFGAHKLCDLIGAPLWFAKYLFICASLITAYFFAEEVVPNKPLAVWLAMLGAATGIIPVGFIVFKHIEDSDNREVRDSSE
Ga0206226_1003352	Ga0206226_10033521	F001506	YENRCKCNEEFSITKKRKSTNRSEGKALQYPKHSEITSKIFQIEYHEHLSLTAKFILNSFHNKYIYYAIDDILYSLRSNPSERDNLLAVLYSPILSLQNDFLVNFFDIWIRDISLNEISKSNKFLKQEAENLEKVNLITIKLFYKTRVPIKKQESLW
Ga0206226_1005552	Ga0206226_10055522	F096759	NTPGQLVFGRDMILNIKHEANWEYIRSRKQKIIEKNNKAENRKRIPHEYTVGDKVLLKRGNENKYEAPYQGPYTILKINENGTVRMKVNDVEDTYNIRRLTPYIGPDDIVHGGECSMRTSRVKRRRQE
Ga0206226_1008408	Ga0206226_10084082	F001506	TKKKLESKKKKGKPRGPNPLVYPDLNESTFTTFQIKYEKKLSSIAKFILNSFQKKYFYYAIDDILYLLKSNPIEQNNLLTILYSPVLSLHNNLCVNFFDIWIDQVYIDERSKVNKFLNRDFQNLEEFTYITITLWYVIRIPIKEKEPLW
Ga0206226_1014526	Ga0206226_10145261	F025377	MNVYGKWILQSVPCFGLGLLMLLSTVTPRQARSNVEAWFLYFGIENIPPWLADEYTDTWVFWIGSVGFCLWATQLYFRQNLRIGKLSVIIRDGEPWVQVDSHIDRSQAAPTSGRLYTYRLALINSADVTFRNVEVKLTSLE
Ga0206226_1019425	Ga0206226_10194251	F002347	VISMSQLDKQQILRQIAAIPAMERGKLSAYSLEERTGMTGPYFKLQRWENGKNHTRHVPCEERPAVETALAGYAHYQELTTQYADLVIAETRQDLADAKKKRLRRRTFSPRRRNSNT