3300021053: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_32mM

Overview

Basic Information

• IMG/M Taxon OID: 3300021053
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0225669 | Ga0210243
• Sample Name: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_32mM
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85582456
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	6
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	1
All Organisms → cellular organisms → Eukaryota	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039966	Metagenome / Metatranscriptome	162	N
F053251	Metagenome / Metatranscriptome	141	N
F074505	Metagenome / Metatranscriptome	119	N
F076927	Metagenome / Metatranscriptome	117	Y
F082271	Metagenome / Metatranscriptome	113	N
F090311	Metagenome / Metatranscriptome	108	N
F102393	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0210243_101097	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	21236
Ga0210243_103144	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi	6633
Ga0210243_103639	All Organisms → cellular organisms → Eukaryota	5039
Ga0210243_107902	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1009
Ga0210243_108509	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	904
Ga0210243_109141	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	818
Ga0210243_109286	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	803
Ga0210243_109365	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	796

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210243_101097	Ga0210243_1010971	F039966	MSDDQERVRLRAREGEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAEELVVLREMCEADSMPARLEQCSISELFRLVEGASFLDASGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAMVGYAGGAPALQPQLTLWMAVTDDAKEVA
Ga0210243_103144	Ga0210243_1031441	F074505	LPVLSVLQTVLQHAAEAFADKTKELSDVLGSINNDQLVAEPYLWLQHHPQRTRRRTADGPRTAQIASHGRLTACRSRLMKYPDRADDRRASLFLRRGALCMLACVILGILCA
Ga0210243_103639	Ga0210243_1036393	F053251	MRATSIEEQVVAPTAKKAKREEQIRVRARDGEEVTLLRDAARLMGTLKDLMDLATSEDGIYPMPTITASTLQMVCKLNDPDYTWPSSDEPSLFQLFQLIEDALYIDAPIALKHIQRAIASQLNGKRAPELCALVGAGGDFDSAEEHAPPHVEPAFVPEGVEAPQQPASSTLPPEPLQQPSFSADAMEAALGLVDVATLAELK
Ga0210243_107902	Ga0210243_1079021	F090311	EERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWMSYAEKHAQASRVLAGALSSLQPEGRAMRWAFNKWWGDCNALQSVRRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSW
Ga0210243_108154	Ga0210243_1081541	F076927	MAPPPLPCTVLPCTEASIFPGLHSVPLVPSHRRELQTAVSNSYGLTRALANTTVGRIVLAPGTYYLNAELSITRSVILEAAVAGSVVLNAQASSSSR
Ga0210243_108509	Ga0210243_1085091	F082271	GLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWAAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWIEYVNALQSVRRATAALRMREERVAFSTWHEHVCSDGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNT
Ga0210243_109141	Ga0210243_1091411	F102393	LCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNDAAEQLTKFTLLCSCASAWLYKSEPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0210243_109286	Ga0210243_1092861	F090311	MRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCSEGERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALGSLQPEGRAMRSALNTWAGVTMQRRSMIVAVSSLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIQSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCVSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSW
Ga0210243_109365	Ga0210243_1093651	F074505	MLATARANRTDGDAEAGAAEAEKIKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPQRTRRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLR