Sample 3300021049

Overview

Basic Information
IMG/M Taxon OID	3300021049 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0225665 \| Ga0210239
Sample Name	Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_0mM
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	84899382
Sequencing Scaffolds	11
Novel Protein Genes	12
Associated Families	9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	9
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F007958	Metagenome / Metatranscriptome	341	Y
F039952	Metagenome / Metatranscriptome	162	N
F043264	Metagenome / Metatranscriptome	156	Y
F053251	Metagenome / Metatranscriptome	141	N
F074505	Metagenome / Metatranscriptome	119	N
F088418	Metagenome / Metatranscriptome	109	N
F090311	Metagenome / Metatranscriptome	108	N
F098631	Metagenome	103	N
F104431	Metagenome / Metatranscriptome	100	N

Family

Category

Number of Sequences

3D Structure?

F007958

Metagenome / Metatranscriptome

341

F039952

Metagenome / Metatranscriptome

162

F043264

Metagenome / Metatranscriptome

156

F053251

Metagenome / Metatranscriptome

141

F074505

Metagenome / Metatranscriptome

119

F088418

Metagenome / Metatranscriptome

109

F090311

Metagenome / Metatranscriptome

108

F098631

Metagenome

103

F104431

Metagenome / Metatranscriptome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210239_100108	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	62210	Open in IMG/M
Ga0210239_101774	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	14656	Open in IMG/M
Ga0210239_102063	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	12515	Open in IMG/M
Ga0210239_103361	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	5943	Open in IMG/M
Ga0210239_103403	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	5780	Open in IMG/M
Ga0210239_104451	Not Available	3152	Open in IMG/M
Ga0210239_105352	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1969	Open in IMG/M
Ga0210239_105893	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1534	Open in IMG/M
Ga0210239_106433	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1210	Open in IMG/M
Ga0210239_107512	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	832	Open in IMG/M
Ga0210239_108531	Not Available	634	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0210239_100108

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

62210

Open in IMG/M

Ga0210239_101774

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

14656

Open in IMG/M

Ga0210239_102063

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

12515

Open in IMG/M

Ga0210239_103361

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

5943

Open in IMG/M

Ga0210239_103403

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

5780

Open in IMG/M

Ga0210239_104451

Not Available

3152

Open in IMG/M

Ga0210239_105352

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

1969

Open in IMG/M

Ga0210239_105893

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

1534

Open in IMG/M

Ga0210239_106433

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

1210

Open in IMG/M

Ga0210239_107512

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

832

Open in IMG/M

Ga0210239_108531

Not Available

634

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0210239_100108	Ga0210239_10010814	F007958	MGIDTTLPGDMGVFDTEGLGEGEPIWDRMCFFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0210239_100108	Ga0210239_10010819	F007958	MGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0210239_101774	Ga0210239_10177413	F088418	LVAMLATQHTDFESFTNALGTLPNQPPVPMACEPSPSPIDVDAKAIVQQVVDVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKAPAMKMRDNRAREVLELMPVTPGCPQATIALLMSKASTHRSAADIKVLRRCGNRAVQLAEAGLKQPTSATSKVVSAETIKALDAHRAAEAQKNGEKRAWVRAEDVALLELHAGDLPMSTHHPALVN
Ga0210239_102063	Ga0210239_10206310	F039952	VADARKFIAMPSEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGEERPRVPPSSALP
Ga0210239_103361	Ga0210239_1033614	F053251	MRSTTAEEQGEARTAKKAKHEEQIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSDEPSLFRLIQLIEDALYLDAPIALKHLQRAIASRLNGKRAPELCALIGAGGDFGSAEEHALPNAEPAFVPEDVVEAPQQPASSTLPPEPLQQPSFSADAMEAALGLVDVATLAELKGVTRSWRALAQRVLC
Ga0210239_103403	Ga0210239_1034033	F043264	VSTAADLTSALANTAVGRIVLASSTYYLTAELSITRSVVLEAAAGATVTLNAQASSSSPRRVLNINPGSSGVVQLIGLGITGGYMGGAGGVFVG
Ga0210239_104451	Ga0210239_1044512	F098631	MSAGSAWPLVGGALVSHGSLVRVRPASDATLLSSLCGPASRAECDFLAHVTAVQGWVLDFDQHQGAWHIFLFCFLRDVIIPSEHMVVMSCIPMSLAFGDFLLANRRGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEEGSISGAQCVSQACRYRDFLRSLPVDAWLQYVFLPDPSMLPSFLLA
Ga0210239_105352	Ga0210239_1053522	F074505	MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEAFADMTKELTDVLGSINNDQLVAEPDVWLQPRQQRTRRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSVRHWSRFRTADLPYT
Ga0210239_105893	Ga0210239_1058932	F104431	MVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHDICLRHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSARDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPGCQLPRKHKVCASRVCTRG
Ga0210239_106433	Ga0210239_1064331	F074505	TARANRTDGEAEAGAAEAEKSKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPHRTLRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0210239_107512	Ga0210239_1075121	F090311	GERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIKSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSS
Ga0210239_108531	Ga0210239_1085311	F098631	MSAGSAWPLVGGALASHGSLVRVRSASDATSLSSLCSPSSRAECEFLSQVTAVQGWVLEYHQQSSSWHIFLFCFLRDIIIPSEHMEVISCIPMSLAFRDILLANRCGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEQGSISGPQCVSQACRYRDFLRSLPVDAWLHYVFLPDPSMLP

Scaffold ID

Protein ID

Family

Sequence

Ga0210239_100108

Ga0210239_10010814

F007958

MGIDTTLPGDMGVFDTEGLGEGEPIWDRMCFFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ

Ga0210239_100108

Ga0210239_10010819

F007958

MGIDTTLPGDMGVFDTEGLGEGEPIWDRMAHFINKRRLDVRNLMGGFDRMKKGFFDLATMRRALCNAFGNQWVELAMTQAEFNEVCEPYLTRVPLQNGEPSAMVQWRQLAQDLQMLAETGRPTADFLERLAAVEAKERASVMLEKEYGVSMDELKLAFEYMKQRVEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWYINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ

Ga0210239_101774

Ga0210239_10177413

F088418

LVAMLATQHTDFESFTNALGTLPNQPPVPMACEPSPSPIDVDAKAIVQQVVDVLLKHSPSPSVHLEVLGRRWLALARNESVTNLTSTLSPAKAPAMKMRDNRAREVLELMPVTPGCPQATIALLMSKASTHRSAADIKVLRRCGNRAVQLAEAGLKQPTSATSKVVSAETIKALDAHRAAEAQKNGEKRAWVRAEDVALLELHAGDLPMSTHHPALVN

Ga0210239_102063

Ga0210239_10206310

F039952

VADARKFIAMPSEDEEVQELKQMFSSPTKSKKHRSPARKPAWDSTPLRSRPSALVGLRPVTREPWAIDEDVYNRKFEMRDVGVPDRYLDKTARVKENNSKYVDYLCRFDQKYSEMNGGYNRFDGEERPRVPPSSALP

Ga0210239_103361

Ga0210239_1033614

F053251

MRSTTAEEQGEARTAKKAKHEEQIRVRARDGEEVTLSRDAARLMGTLKDLMDLATSEDGIYPMPTIMASTLQMVCKLNDPDYTWPSSDEPSLFRLIQLIEDALYLDAPIALKHLQRAIASRLNGKRAPELCALIGAGGDFGSAEEHALPNAEPAFVPEDVVEAPQQPASSTLPPEPLQQPSFSADAMEAALGLVDVATLAELKGVTRSWRALAQRVLC

Ga0210239_103403

Ga0210239_1034033

F043264

VSTAADLTSALANTAVGRIVLASSTYYLTAELSITRSVVLEAAAGATVTLNAQASSSSPRRVLNINPGSSGVVQLIGLGITGGYMGGAGGVFVG

Ga0210239_104451

Ga0210239_1044512

F098631

MSAGSAWPLVGGALVSHGSLVRVRPASDATLLSSLCGPASRAECDFLAHVTAVQGWVLDFDQHQGAWHIFLFCFLRDVIIPSEHMVVMSCIPMSLAFGDFLLANRRGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEEGSISGAQCVSQACRYRDFLRSLPVDAWLQYVFLPDPSMLPSFLLA

Ga0210239_105352

Ga0210239_1053522

F074505

MPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEAFADMTKELTDVLGSINNDQLVAEPDVWLQPRQQRTRRRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCSLCRFPYCSVRHWSRFRTADLPYT

Ga0210239_105893

Ga0210239_1058932

F104431

MVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHDICLRHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSARDASRMLAEVNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAAKPGCQLPRKHKVCASRVCTRG

Ga0210239_106433

Ga0210239_1064331

F074505

TARANRTDGEAEAGAAEAEKSKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQPCPHRTLRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA

Ga0210239_107512

Ga0210239_1075121

F090311

GERDAALRRAVSSMLQSSVRASLNTWTSYAEEHAQASRVLAGALSSLQPEGRAMRSALNTWAGVTMQRRSMVVAVASLIRGEQLWGLRTWSAHAALVRRQRERVEETARRAIKSMSLQSLRAAMNTWTAMSEARQRNQQALLSAASAFRGDGMRKAWNGWLGLLHDREVMASAVNCMSLRLQRAGFASWVSATEVSVTKQQLRACIRSLSPATRSMRKAINSWSAKQNMMRALSRATAALRMREERVAFSTWHEHVCGEGERDAALRRAVSSMLQSS

Ga0210239_108531

Ga0210239_1085311

F098631

MSAGSAWPLVGGALASHGSLVRVRSASDATSLSSLCSPSSRAECEFLSQVTAVQGWVLEYHQQSSSWHIFLFCFLRDIIIPSEHMEVISCIPMSLAFRDILLANRCGTLRSLLDDSELHLEREVLHVVAVHSKLLQLQEQGSISGPQCVSQACRYRDFLRSLPVDAWLHYVFLPDPSMLP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300021049: Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States - P5a_0mM

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences