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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300020713 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0053535 | Ga0214222 |
| Sample Name | Freshwater microbial communities from Trout Bog Lake, WI - 20AUG2007 hypolimnion |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 96472500 |
| Sequencing Scaffolds | 13 |
| Novel Protein Genes | 13 |
| Associated Families | 13 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 7 |
| All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium ADurb.BinA184 | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → hypolimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008860 | Metagenome | 326 | N |
| F013318 | Metagenome / Metatranscriptome | 272 | Y |
| F028046 | Metagenome | 193 | Y |
| F029738 | Metagenome | 187 | Y |
| F036523 | Metagenome | 169 | Y |
| F036667 | Metagenome | 169 | Y |
| F040987 | Metagenome | 160 | N |
| F065359 | Metagenome / Metatranscriptome | 127 | Y |
| F066497 | Metagenome | 126 | N |
| F082055 | Metagenome / Metatranscriptome | 113 | N |
| F088241 | Metagenome / Metatranscriptome | 109 | N |
| F093632 | Metagenome / Metatranscriptome | 106 | Y |
| F098526 | Metagenome | 103 | N |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214222_1001257 | Not Available | 5264 | Open in IMG/M |
| Ga0214222_1006717 | All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Raphidophyceae → Chattonellales → Chattonellaceae → Heterosigma → Heterosigma akashiwo | 1546 | Open in IMG/M |
| Ga0214222_1008094 | Not Available | 1345 | Open in IMG/M |
| Ga0214222_1010556 | Not Available | 1125 | Open in IMG/M |
| Ga0214222_1011109 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium | 1088 | Open in IMG/M |
| Ga0214222_1013239 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Polynucleobacter | 975 | Open in IMG/M |
| Ga0214222_1016826 | Not Available | 850 | Open in IMG/M |
| Ga0214222_1016945 | Not Available | 847 | Open in IMG/M |
| Ga0214222_1018240 | Not Available | 811 | Open in IMG/M |
| Ga0214222_1024642 | Not Available | 681 | Open in IMG/M |
| Ga0214222_1025085 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 675 | Open in IMG/M |
| Ga0214222_1029986 | All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae → unclassified Lentisphaerota → Lentisphaerae bacterium ADurb.BinA184 | 611 | Open in IMG/M |
| Ga0214222_1041501 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Prolixibacteraceae | 508 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214222_1001257 | Ga0214222_10012574 | F098526 | MAYSIFTAAETEAFFNSIPDVGVINRQTNPTGHKVVINNITYSILFDHNGAFWTIFEHPNGTYDRQTKLLQRIHQSYTTYCCGVWQLGSFYCPFDVPHEIEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHDRILKAFIRNGFVDNSPETFNPNSGNLIKGLVRPCQPPKTKRVTRAMLQQRLDNILGALHGNT |
| Ga0214222_1006717 | Ga0214222_10067172 | F082055 | VERLETVAQFNERFGQGQTTRQGIGWNQNKSVPFSKMSNKQQRGKLTELTRQEAEDKRIVMLMRYNMQNGFLNWGKLEMEMECDDLTWKKVLTQYSDRLLSFVLNSQLNTLPTPNNLRLWGSAKNLSCGLCGKSDSVTFGHIMGGCPWVLNVENKTSPNEDRYTWRHNNVLRVLCNAIIHKVQQCNADNHKNTISGIQFVKEKASATTINTAKTQSKRKTFYGDLAGANDWTVFFELPELKEFSIKHFPQDICQTKKQVDAFVISQSRKICLVGPELTVPIEERIAFWNEKKTGKYEKMIADHGSPSWKLKCIVAEVGCRGYIPPSFRKALQHFGFTSKELKTLVDECSLVSRRSSYYIWLNRFHQSFIPFQMVQIDIAAYQSIAVV |
| Ga0214222_1008094 | Ga0214222_10080941 | F036667 | PPTPAPTNPHGRGDSAPTSLMTSISSSTPEAPDRKHAAEIETARNQAAWLSFEAAIHQNDTLRARVSRALDRFGLGSSTAAVDEAIDYLINKELGQSARYFNQTGKPQFNQQQITHAVLSFMAGKEQQRHMTDLAIHEHDTDHDDDTPGSIRASSLPDSGRITPDEVAARRDALRAIDAMIPDTERELYSLMLAVREPGMLDRIHAYADRHQIGRSTVYFRIKKLAEAIQLHPWFDEITAPFRTASRTA |
| Ga0214222_1010556 | Ga0214222_10105561 | F088241 | NYQQAAIPNAGAIAADTPSFTFSNINFTITRYEFGDSSYYDALNRALDSGHEFQIYFKNYQTFTGTSTIDKNQSMRISIASQSLNYLIGTFQAPNRTTITQPINTLISPPQAGETGVYTATFDNQVDSGMPRTFNNALYFVRNGSKLVSSKWSVDQQDFPVKDIYDIYNENLRHWGKFGKPDSIYKGIQTIYHFQETFFTDVLSLEIPDQYNDGIYNVSGVNCKGVPLNIIYNTVGGADTSYYQYTDVSTAANIFGVNKKGFSAHNLYLDTASTYTPVIIANFTSKLVLSKGRNCAYYN |
| Ga0214222_1011109 | Ga0214222_10111093 | F008860 | MSAFVKSDTRTPVPGDIIFAHSNGWMAKCIRFAERLRWRKGSYWNHACVISRVDQDGTAYVIQAELKGVSEARLDSVGDYVVLEPPHGVNRNKVLAFTKMQVGSKYGILSILSVVFDIISPDWFPSMRMPNTWICSAVTGEALRYGGWLHDWNDIYCITPSQ |
| Ga0214222_1013239 | Ga0214222_10132393 | F036523 | MSYNYGSPITGTLTGTTAVVNVPNVVYPASLVLNSSNGSRAIQFSFDGGVTYYAAVTPTYTETSQIVYVLNFPVTTV |
| Ga0214222_1016826 | Ga0214222_10168261 | F028046 | MKLKILLLVAGVAVIGSSVTVLVIQSRPRQLKSSPPENQLPAAISNYSKTFKLNTSPPIWGQSTN |
| Ga0214222_1016945 | Ga0214222_10169451 | F065359 | VSILTCMHDCNFADEVCVWVMSTLLWTCPQNHGHMDGLNVGSISCYFMLQITNLGVCKCILCSCVMILHTPHMYFRVQPVLRANLCSVGFANVDVFFSKCVLQKWP |
| Ga0214222_1018240 | Ga0214222_10182403 | F040987 | KHNVVRWLPARCSWWGVDLMQSTTLQRGAEERKVTLYENGNSYLITVTVLQSLFHEVGHTETLYAPNTKSQAEFLFGSAVRFLQGFQYIVTDGVLA |
| Ga0214222_1024642 | Ga0214222_10246422 | F093632 | MARANENARGHGSQDLNLTFIAIKRAEAGSADRLPDKDAIPGTAAGTQRNKHVTVASA |
| Ga0214222_1025085 | Ga0214222_10250851 | F066497 | MTEHEFKEWKSYHVTEEFFNFLKKAKVETQEAWANRQFVTDGENQFALGGVYSINQILDLTYEDITG |
| Ga0214222_1029986 | Ga0214222_10299861 | F013318 | VVTERTNTVYVTNATSGAVSGYVAREPVATNLVAAMVTNFVPVFYTNVVQVPVTNLVARPEAEAAIQAAGSVVNTFAPGIGSIVALALGGLYHGYRQVRNRKVNEALVQGVETARAVLTTTPQGQAADAQFVKWLMDHQKEAGVFATVSELVDQVADNPAAKMAAQGIRRFFPEVCSESDVTVLGMQRKLDGGVHGDLLCSSV |
| Ga0214222_1041501 | Ga0214222_10415012 | F029738 | MTYKNDPRMITAKFNSVCSKCGCSIKKGTQIYYWPSDRKAYCEKCGEGPYRQFRSEAADEDMINGNGPCAY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |