3300020709: Freshwater microbial communities from Trout Bog Lake, WI - 01JUL2008 hypolimnion

Overview

Basic Information

• IMG/M Taxon OID: 3300020709
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063444 | Gp0053559 | Ga0214233
• Sample Name: Freshwater microbial communities from Trout Bog Lake, WI - 01JUL2008 hypolimnion
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 99511045
• Sequencing Scaffolds: 38
• Novel Protein Genes: 41
• Associated Families: 40

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	11
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	18
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Phaeobacter → Phaeobacter gallaeciensis → Phaeobacter gallaeciensis DSM 26640	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → hypolimnion → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Trout Bog, Vilas County, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.041
  • Long. (^o): -89.686
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F002824	Metagenome	527	Y
F006660	Metagenome	367	Y
F008677	Metagenome	329	Y
F011059	Metagenome	295	Y
F013523	Metagenome	270	Y
F013852	Metagenome / Metatranscriptome	267	N
F017785	Metagenome	238	Y
F021463	Metagenome	218	Y
F023091	Metagenome / Metatranscriptome	211	Y
F024467	Metagenome	205	Y
F028402	Metagenome / Metatranscriptome	191	Y
F030331	Metagenome	185	Y
F032114	Metagenome / Metatranscriptome	180	N
F034813	Metagenome	173	Y
F036528	Metagenome / Metatranscriptome	169	Y
F037028	Metagenome	168	Y
F040982	Metagenome / Metatranscriptome	160	N
F040987	Metagenome	160	N
F044873	Metagenome	153	Y
F046794	Metagenome	150	N
F049375	Metagenome	146	Y
F051640	Metagenome	143	Y
F051645	Metagenome	143	Y
F052309	Metagenome	142	Y
F052345	Metagenome	142	Y
F053107	Metagenome	141	Y
F054474	Metagenome / Metatranscriptome	139	N
F059596	Metagenome	133	N
F059597	Metagenome / Metatranscriptome	133	N
F065357	Metagenome	127	Y
F066311	Metagenome	126	N
F069662	Metagenome	123	Y
F078138	Metagenome	116	N
F079523	Metagenome	115	Y
F091218	Metagenome	107	Y
F093142	Metagenome	106	Y
F096492	Metagenome	104	N
F096503	Metagenome	104	N
F102528	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0214233_1000353	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	16465
Ga0214233_1004507	All Organisms → Viruses → Predicted Viral	2516
Ga0214233_1004726	All Organisms → Viruses → Predicted Viral	2421
Ga0214233_1004948	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2343
Ga0214233_1005512	All Organisms → Viruses → Predicted Viral	2161
Ga0214233_1007536	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1683
Ga0214233_1009197	Not Available	1441
Ga0214233_1009546	Not Available	1400
Ga0214233_1009901	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1358
Ga0214233_1010948	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1262
Ga0214233_1012684	Not Available	1127
Ga0214233_1014499	Not Available	1024
Ga0214233_1014603	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1019
Ga0214233_1014832	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1009
Ga0214233_1015334	Not Available	985
Ga0214233_1016287	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	943
Ga0214233_1016553	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	932
Ga0214233_1016760	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	924
Ga0214233_1021395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Phaeobacter → Phaeobacter gallaeciensis → Phaeobacter gallaeciensis DSM 26640	779
Ga0214233_1024974	Not Available	703
Ga0214233_1025139	Not Available	700
Ga0214233_1025244	Not Available	699
Ga0214233_1025328	Not Available	697
Ga0214233_1026613	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	676
Ga0214233_1028290	Not Available	651
Ga0214233_1028542	Not Available	647
Ga0214233_1028774	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	644
Ga0214233_1031740	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	606
Ga0214233_1033012	Not Available	592
Ga0214233_1033536	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	586
Ga0214233_1035078	Not Available	570
Ga0214233_1035667	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	564
Ga0214233_1036761	Not Available	554
Ga0214233_1037059	Not Available	551
Ga0214233_1039717	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium	529
Ga0214233_1040339	Not Available	524
Ga0214233_1041284	Not Available	517
Ga0214233_1041490	Not Available	515

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0214233_1000353	Ga0214233_100035316	F091218	MLMPETAKVVDSFRTVFPKIKVLYAEEGDYRIGKKPDTSKYVVPCIDERKLEKRKKK
Ga0214233_1004507	Ga0214233_10045072	F036528	AVITEKYGSLKEREIEIMRQGQGTDTTYMAFALDKKEIENIDTRYAKFLPDVEAFLNRIGSQEYYDAQLHGIVKEKEAFSPKASTPSSVSVDDDEYAEEEFVSIEEETTADRLRRKMAGQ
Ga0214233_1004726	Ga0214233_10047261	F052345	MDRRTREYNELVKMTPTTQELLSEEIDGEIYLYKSSPNCKICTTSDDLKNIIDSLLLFPKTYKEVLKAIEPIQDKLGIEGSERINYENIRNHQKRHLPFEKLMVREIVEKRAAEKNRSILDAGERLLTAEAFYEVIVAKGFEGIAQGYDKPTLTQTMYAMDMLTKLEKEGRDDYRPEELVNQLDMILTAIREVLPADMKEALFNKIEELQLGTAPKKKARRLPEAEIIDADYVDE
Ga0214233_1004948	Ga0214233_10049481	F044873	MIIDKEVITLADIDEAIAHLSEMMKDRYRNRLTHQRKAFLMSELDSLLDARLEAISELGNSSDREPRARP
Ga0214233_1004948	Ga0214233_10049482	F079523	MVEELWTSKQVIEHLEIEINNLRQLQFRKTLAWVKKEGKSVFYLADDVKAYKLKREARKTVK
Ga0214233_1005512	Ga0214233_10055123	F059597	VAEIVTGIPNFEESLEAMKISVDEAARKFVLQGAEVIKREAKKMFITGADAKITESWRSDAWPLPTRRTGNLMASIYSDGAKKTGEGKWESQTGPHIVYGRRIELGFHGSGRWPYYTTRPFPFMQPGIDNSIPQLDILFNSLVTAAQEA
Ga0214233_1007536	Ga0214233_10075364	F054474	VFSNTGPTAASAPTADATNTVYRGVVFYLPYSCNITDVILDVGTIPKDNAGTPVAVSAIQPYVSNNFATSTGVYATFANISSPAAQRYTATFVGSQLTNSNATLQDFQNLQAGQEPAWFTQVVVTLKMTTTSAGLSSGQVEVTLRYNQNDMNIGNATTYPYGNFD
Ga0214233_1009197	Ga0214233_10091972	F002722	MAAGRATLRSTLYSYLTGSSIPTLNQVFTSFPKRINYQVNATAGQMSRAAAVIFIQSERETRLAIGGATNGWKRVDYTVVLQVFHHSMQNNAEDAMADFDTLVDNIKGTLRASHNFGDSSQVNVWQGAEPAIDCLYGEPVTSDNGATETFAEIRFDVTQMIQA
Ga0214233_1009546	Ga0214233_10095461	F049375	MLSILIADQSLDLSDDFSVSLNLKSPIFNDVGDYSFPFKVPSTARNMSILGWKNRLSTTRSIYETFDGSIRWNGIVLFVGQIKIKTASDKTFEGTLYINKGNFNYEVKDLLLNRIDFGMKSFPTDQDAVNYFNWSLTHFYPEVDFSLPEIANLDFFDPVATNPELMAYNHIFPDGWLHKTTTDGQSRTILIPFLYLKFVLNKLAENFGYRLQDEFFTSSIELSRLVIYHSVNLSEVIFGLQQIYYCRFLPKVKVSEFISGLEKWFNCCFHVDSKQRVVRIVSNKEVLLRSEVVEFSKNVLSISQ
Ga0214233_1009901	Ga0214233_10099011	F096492	MAIARFEQINVNNVTNSVDTIGQQTTTITLWFQTRALVQDVRDAAQIGKDDRTYTKNVKFVLNFTPNTLQMSEHQNLYSITWRGQEYRINDVMESNDRMNVSFLCYRNDPA
Ga0214233_1010948	Ga0214233_10109484	F011059	MGNMTPEQWEARYLNEEGSNYPQEKRLEFVKDYLLDPNLAAVCRKHDVPYQTAFQWKNKSWWHNMVEEILLNYKDELLAKQRQIINKTYDEIGERLINGDETYIPNEGHVRTKVKANHLATIADVTLKANQLLQGKATSINHVTIE
Ga0214233_1012580	Ga0214233_10125801	F093142	MGILDIFKGKKPAQNESNTLFGQTQLGNQILRQNQNGQTGANYQLLYVTTSSTTNAGRIVDMSVLSRNSTIMSCVNLKSRALAQCNLKVMYKTDDGVFE
Ga0214233_1012684	Ga0214233_10126841	F053107	DIYNYIKLRYNKSVEINDIKTKLIILIKNNIIFVDNKNNELTEEGHVILNDHKYYYSKIIIRFFKKYNKTHRKYQLREIRKEQQQLRNYLITNKQNICIICDKKLPLCLLETAHLKPRCILNNNERNDKNVVEFMCRYCHNLYDNGFLAVYNGLLYVSTFIDNYDLDYNKNKQITFYNLQNEKYFIFHYKYIYKAGV
Ga0214233_1014499	Ga0214233_10144992	F030331	MSKLTLPSGATVTLKDPNSLKVKDRNRIMKAGDGGSAAERGIAISNALLAAIIEDWSYDLLVPSVKEESIEELPIPDYSLLVKETESYIKAIFPELADTDLNRLNPDSPLEN
Ga0214233_1014603	Ga0214233_10146031	F013852	MGRSTFDGPILSGDNRFGPVRDVGYTDLVQTALLDFSVTSAGTNYGGGSGVFVASNNIPNSAATIYTPQSGVYSTNGPTKASAPTADATNTVYRGVVFYLPYSCNITDVIFDVGTVPKDSAGTPVAVSAIQPYVSNNFATSTGVYATFANISSPAAQRYTATYVGSQLTNSNATLQDFQNLQPGQQPSWFSQVVVTLGMTTSVAGLSSGQVEITIRYNQNDMNIGTSTTYPYGNFD
Ga0214233_1014832	Ga0214233_10148324	F011059	MVRKREKMSKMTYDQWEARYLEEEGSNYSQEKRLAFVNDYLLDPNLAAVCRKHEVPYQTAFQWKTKSWWHNMVEEILLNYKDELLAKQRQIINKTYDEIGERLENGDESYIPNEGHVRTKVKANHLATIADVTLKANQLLQGKATSISHVTIESLADKLRTITQEAIDITPTTPSIEQVAQIHQES
Ga0214233_1015334	Ga0214233_10153342	F052309	MTLDEINQQLANLATCGDPQFAQAAQYVAQATQAAQTGQMTPQELTETLQDMQRQLDIIQDMSRLQFKETLNTVINGLITIAGFAL
Ga0214233_1016287	Ga0214233_10162871	F078138	LRGFIPSNPHFMPSNIDMVLERKGMFLFGEWKREDEEIKTGQKILLKELAWIHRVLLITGYVDNQPHISLIQQVLPNGNLKVVGKSVADLIKYIQDWYKDAENND
Ga0214233_1016553	Ga0214233_10165531	F066311	GRFPARNSRGTIGSVMTWILTFFSDLFYILAMLALVGGIALYGVSYVAKWLPVIATYALLMQVGGIVLALGGGYFVAEHKGYEKRLAEDKAEIDRLNAEARQKEAELAQTLKEKTAALRKATNAISQKQVVTNQRIDAGELRFPTSCPVQASSDAGTPAGNPENGTQSEREILKTINDITTQGDTAIVRLNACIDQYNEVKGKVNAQQ
Ga0214233_1016760	Ga0214233_10167602	F006660	MAFQQIFEIQQKMTVNNRRIVGQQVTRAGYMNTAQYLTAVPWQFTVIPHNFLYYPKVRNIIQGIDNLDRQLPETIIFNSSLLSWFTSYQGDLNLSDAQALTLAAVPAANSQTITVGNLPSVSSTAAVFRAGDFLQLGSYSYKVSADVLRGSGSTVSVNLKRPVIGTVTTGTLTAVANNCTFTVVAEQCPTYTLNPMTNGAFVEWSGPFVFREYVTG
Ga0214233_1021395	Ga0214233_10213954	F032114	MIHFLGGMQSVKATYLVWSRYKTASLPDWEWVNDLPNGVSQV
Ga0214233_1024974	Ga0214233_10249742	F065357	MDIEKSLVRHFADLDSFNEIWNKGVRSEHFFDDGVRELFEYSLDYYIRSEFKDTATQELLENKFADYFARNEWPEKDYLVCVLIEEMMTKYRKATTQNILLKAATALEEDPEIGIALALNSLSKIQNDTSTRERLEVYGEGYDRRVNNYLDEVANPSRDKKGIYLGWDELNDHMYGIQKG
Ga0214233_1025139	Ga0214233_10251391	F028402	MTTFNFDTFKEALNPAKFIDQAEKNTQAILAYVEPKELSKTLVGLTSDTADFVRAQVAAINSITSIVKTQTEEFTKQFTKAA
Ga0214233_1025244	Ga0214233_10252441	F040987	LLLHKANALVPEEVIMQSTTLKRGPEERKVTLYKNGSAFLITCEVLASNFHKEGHSEVLYTPDTEAQAEFLYGGAVRFLQGYQYEVVSECLA
Ga0214233_1025328	Ga0214233_10253281	F059596	NMNKNKREVKLINCNLLDVKNNKLIKMKGYVKIVNYNNKEYFEVNLSDGDFKNEKYILIGSNEKFKIFDKDDNGGYFVI
Ga0214233_1026613	Ga0214233_10266131	F023091	MALFSKNTLTQVSGFDNQIIAGELVYDQKTFWNLALNTDGVPINLTGVTIDAQIIRRQVSNLQDTRYGLSFDIADYVPEPDPVTLTITNRIDANGFFTLIIDESAWDVIAS
Ga0214233_1028290	Ga0214233_10282901	F034813	MVEFESGRTIHVQFFDVQEVKEYCADNHAGDIIKSIYKEVYNNFAEAE
Ga0214233_1028542	Ga0214233_10285421	F046794	MACKNCKFYVFMQNDMLGACKLNPVVVNKSPSDWCGQEIPAKYEATIVPDAPLDIKFVYDINTDEVKPKRERKSANKGQPK
Ga0214233_1028774	Ga0214233_10287741	F017785	TPIAPIQGTNNIRYADFIRVVTPTQTYRFATTQSALTIPSVDSQPFNGLGQLVGIGAVQRDIKSTANQTTITVVGIDTSMLGWVLSQEIKGSQITMWKGFFNPDGTLITTGGNGGLYQYFYGFVNTFQISEQWMEEQRMYVGTITISAANIQMILQNRVAGRYTNDASWQFYNAGDTSMNRVNTISTVYYAFGKQ
Ga0214233_1031740	Ga0214233_10317402	F013523	FPKRRIFSIIDMSGTQVNRDTTSPFGITDRIILEKYGFTIINTRKSNPMVSDTDNTSNAFISRGGLYVNPDDKLLLDALATYHFEDATRKKLVKYTEQRYAHIDGLGDCIRYGIHHLFPIQLTDQNFPEYVGMDQSFVARNDPANKYMPDSPLYPGGPTWEEIMNNESEPDHQVWM
Ga0214233_1033012	Ga0214233_10330121	F102528	TYGDDEHEHLVTISAARCGHLDTVIRTMAHEMIHMSRSGTITDAWLKHDATFRRRAHNISQELGFDSLEL
Ga0214233_1033536	Ga0214233_10335362	F021463	EVYSKNHAEDIKELRETTIDLKGTMHSIEKNLSQIKYIAIGALVVIVAQTIGLDKALRVLFGA
Ga0214233_1035078	Ga0214233_10350781	F024467	MAEFDSTENQEWTINLDIGVISSGLANDPAFIAAVSKAVRDQMTKDVRWMGNLFAKWAQT
Ga0214233_1035667	Ga0214233_10356672	F051645	MTTGTTDRFYLPLIYLVKRYGSLMGACKALKISHQRISHWNKQKSIPDAWKVLLHKKYQIPYKSFFEQLEK
Ga0214233_1036761	Ga0214233_10367611	F069662	MDTKKLIPYSVYLPLEHHQKLKELAKQRKASVLIRNAIGMLVDGTDAFTTGYNVGIQDAAKVIYDCEEAQMIAIKGKDLGVVLSERIEELKRXLKKAVCIKL
Ga0214233_1037059	Ga0214233_10370591	F037028	FVISLHQSEEREMEKKSFDGEPVNYDSDSYDEIVVIKVAESKEELVAGIDLANAQPRDLLIYFADRFKETHGYTYNIEWVKESAIFKSFKERYGLDAGPMVALLFDNHKGKLNDLVMTATAFSKGSKWIQDTLYIELQQQKLKNENRNSTEGLMNTNDFIERFAV
Ga0214233_1039717	Ga0214233_10397172	F002824	MTKITAPVQKPTNGGASKEETAVLAAVKTVLNPEASKTEEKKPVLQIEPEKPVIPAVEPKKEMTMLEKILKVENLQLVVEKRAKLVQTRSELERFQISSNDFNCSMRLNDSDGNVFTTSFTPGIK
Ga0214233_1039937	Ga0214233_10399372	F096503	MSYRTGRKIVWGSAAIVGLYVDLTASGGISFWVAVYGLGTAVAVATLLAFITKR
Ga0214233_1040339	Ga0214233_10403392	F008677	MIVEKDRVYTFKLTNADEIVGKIVDITDESYIVAQPLSAVPTEKGIQLIFTVFTGDPKENATINKTAIAMICQTREEVGDHYLEATTGLKPVRKPSIIMG
Ga0214233_1041284	Ga0214233_10412841	F040982	MTRKRKRDLKAEGKWWSDSQKLEAATTFLAIGNGAQTAAALDIPLATFNRWRYTEWFKKMVDDLKAEDNLKLNARLNKIVARALDVTEDRLEKGNYQYDPKTSELIRVPVSMKDAAKVANDMLERKDVIETKPVQEQIEKTVDARLA
Ga0214233_1041490	Ga0214233_10414901	F051640	VSRLVPRDGFAKEVEIKRQSGSRVLRADKSGLYSAENPKDIKALKAEGFTEANLALHTQGDNDRGYTCLNCGFGSWFRKCSRCGHEYPESFNTDGD