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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300020703 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063444 | Gp0054264 | Ga0214227 |
| Sample Name | Freshwater microbial communities from Trout Bog Lake, WI - 16OCT2007 hypolimnion |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 76999047 |
| Sequencing Scaffolds | 15 |
| Novel Protein Genes | 18 |
| Associated Families | 18 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses | 1 |
| All Organisms → Viruses → Predicted Viral | 3 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula | 1 |
| Not Available | 7 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin063 | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → hypolimnion → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008512 | Metagenome / Metatranscriptome | 332 | Y |
| F008860 | Metagenome | 326 | N |
| F011648 | Metagenome / Metatranscriptome | 288 | Y |
| F023511 | Metagenome | 209 | Y |
| F025903 | Metagenome | 199 | Y |
| F039449 | Metagenome / Metatranscriptome | 163 | N |
| F040987 | Metagenome | 160 | N |
| F044011 | Metagenome | 155 | Y |
| F053107 | Metagenome | 141 | Y |
| F059597 | Metagenome / Metatranscriptome | 133 | N |
| F062810 | Metagenome | 130 | Y |
| F067353 | Metagenome | 125 | N |
| F082038 | Metagenome | 113 | N |
| F094793 | Metagenome | 105 | N |
| F096503 | Metagenome | 104 | N |
| F098526 | Metagenome | 103 | N |
| F100258 | Metagenome | 102 | N |
| F102548 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0214227_1000857 | All Organisms → Viruses | 6004 | Open in IMG/M |
| Ga0214227_1002672 | All Organisms → Viruses → Predicted Viral | 2632 | Open in IMG/M |
| Ga0214227_1002932 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula | 2437 | Open in IMG/M |
| Ga0214227_1007099 | Not Available | 1173 | Open in IMG/M |
| Ga0214227_1008111 | All Organisms → Viruses → Predicted Viral | 1064 | Open in IMG/M |
| Ga0214227_1008264 | Not Available | 1052 | Open in IMG/M |
| Ga0214227_1008846 | All Organisms → Viruses → Predicted Viral | 1005 | Open in IMG/M |
| Ga0214227_1012382 | Not Available | 815 | Open in IMG/M |
| Ga0214227_1012722 | Not Available | 801 | Open in IMG/M |
| Ga0214227_1014547 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 740 | Open in IMG/M |
| Ga0214227_1015733 | Not Available | 710 | Open in IMG/M |
| Ga0214227_1019780 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 627 | Open in IMG/M |
| Ga0214227_1020210 | Not Available | 620 | Open in IMG/M |
| Ga0214227_1021649 | Not Available | 598 | Open in IMG/M |
| Ga0214227_1029331 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium ADurb.Bin063 | 513 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0214227_1000857 | Ga0214227_10008571 | F053107 | IKLRYNKSVEINDIKTKLIILIKNNIIFVDNKNNELTEEGHVILNDHKYYYSKIIIRFFKKYNKTHRKYQLREIRKEQQQLRNYLITNKQNICIICDKKLPLCLLETAHLKPRCILNNNERNDKNVVEFMCRYCHNLYDNGFLAVYNGLLYVSTFIDNYDLDYNKNKQITFYNLQNEKYFIFHYKYIYKAGV |
| Ga0214227_1002672 | Ga0214227_10026727 | F008860 | MSAFVKSDTRTPVPGDIIFAHSNGWMAKCIRFAERLRWRKGSYWNHACVISRVDQDGTAYVIQAELKGVSEARLDSVGDYVVLEPPHGVNRNKVLSFTKMQVGSKYGILSILSIVFDIISPDWFPSMRMPNTWICSAVTGEALRYGGWLHDWNDIYCTTPSQLFDSLVE |
| Ga0214227_1002932 | Ga0214227_10029322 | F008512 | MALAGLNKIETAQRKTPKGGQKERTHREEHGNSAGSVKNFQAPAMLKTTPLDCEIKRNLREKRRDPWFGANAPSKAVADPEPVVKTRMKFAGVS |
| Ga0214227_1003893 | Ga0214227_10038933 | F096503 | MIKMSYRTGRKIVWGSAAIVGLYVDLTASGGISFWVAVYGLGTAVVVATLLAFITKR |
| Ga0214227_1007099 | Ga0214227_10070992 | F040987 | MQSTTLQRGAEERKVTLYKNGSAFLITCEVLASNFHKEGHSEVLYTPDTEAQAEFLYGGAVRFLQGYQYEVVSECLA |
| Ga0214227_1008111 | Ga0214227_10081112 | F094793 | VNNRDRISRDVERSLKTLNTLTPALVADLVRRAGTRAMPDKSPSQGPKGKGTHSDPTLAAVIRKMSGDTSNDPIYEAVRTIALTLNDIATLSQLIDQQIRYVTEGAERQKESTIVFCQACEREVAGTPKDRIRSGYCHGCFAKWGRRGRPYRALFEAEIKQELSETS |
| Ga0214227_1008264 | Ga0214227_10082642 | F023511 | WEVYLMDSNDDLLSEVRVFNNDARVFENEKVFFYRNSFSAYDTFRFLGKSELNLEYERQIGTTVREEKYSFFNAATKQFSAKETESCKANSGWISLQEKNCLRELLLSTEAYEQINNELFQIVVKTAKVTPFLKDGEYLYNLEIEYERSYQNSFFSVHIPESSANAIILPQPLTWDNMEVSFDDMEITFDQIEY |
| Ga0214227_1008846 | Ga0214227_10088461 | F067353 | MSKNAERMIRDKNRAMNTLNALNETLINDLVRRASTRATVDQSPDEGAKSKGGISNPTLNAVVRTMSGKRVADPIYDSVKELAVMLSNIAELAQRIDERVAFITDTKSSIKELVVVYCEACQREVAGTVSDRIRSGYC |
| Ga0214227_1012382 | Ga0214227_10123822 | F102548 | MSTLKKWLLFLIVAVALFHTVGGSFADVFGGGTSLFTPAHGWNEGLIYMLLALVVAVAMK |
| Ga0214227_1012722 | Ga0214227_10127222 | F098526 | MAYSIFTAAETEAFFNSIPDVGVINRQANPTGHKVVINNITYSILFDHNGAFWTIFEHPNGSLDRQSKILQRIHQSYTTYCCGVWQLGQFYCPFDVPHEIEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHDRILKAFIRNGFVDNSPETFNPNSGNMIKGLVRPCQPPKAKRATRAMLQQRLDTLLGVLHGNT |
| Ga0214227_1014547 | Ga0214227_10145471 | F062810 | QHVRDRKQRLRDLANNNSAFDLKHSAAEVWLLGAGLESLANNNSTPAQVWIVEPLARRKPPVSESCKQQRPAIEAASDG |
| Ga0214227_1015733 | Ga0214227_10157332 | F059597 | VAEIVTGIPNFDKSIDSMIVRVDEAARMFVLEGAEVIKRESKKIFRTGADAKGIDSWHSNAWPVPTRRTGNLMNSIYSDGARKLGPGKWESQTGPHIVYGRRIELGFHGNGRWPYYTTRPFPYMQPGIDNSIPRLDSLFNSLVIAAQEA |
| Ga0214227_1019780 | Ga0214227_10197802 | F011648 | MSEQDQDFNNFQQHLERIFKEIEDGVFLSADEIGDLRYACGLPARNTHVNPVLRDVINDFGNVFGLQNFPTIRGKK |
| Ga0214227_1020210 | Ga0214227_10202102 | F100258 | MLTVEQITKGIQTEMRKVSQAVDDLAIAGDEAANADATWEIARAKSSLRISAESMEKLTVSELAHRTIIECESEYLAYLIAKNRHDTVKSALRASQSRLDALRTLMTSLRVAGG |
| Ga0214227_1021649 | Ga0214227_10216491 | F039449 | TPVYIPVTAPQVTPMQTFLRDEALRGSPVMVYDQVQGVRHDEYDAKFYLFADTFPNLVKAVLGGTDTVTGSGPYTHNIKLLNNASIGSQPQSYSIMDFDGANYFLVSGAQAESLNITFGAEASADGTIKFFGNPYVSSTTAPAPFTSFSYVEETGEHPIPAWDTTIVINGTTYNYISTGELKIDRKTKPIFTMGNQGPY |
| Ga0214227_1023598 | Ga0214227_10235981 | F082038 | MTFDEKQKAEALESFSSVMALYQALRGNPSALRVRRAVAKGGEIEALGIDYLLDVELKAGRVLSYPDY |
| Ga0214227_1027805 | Ga0214227_10278051 | F025903 | TAGHAFHLQFAGKTLIFQSAGFTGFDGLLFEVAYLGQTFNDFANNIYQCFLSNYEIQKYFNVTLDPPGTSQRSIKLQAKETGSDCSVVLSNVGVTGVAAGINTPGTDDVYRDYFGILCLIRDTWNNPIGEDIKPSDFIGCARFDISDYIRSKFAAWELTRFEFPELVGNVKAHGW |
| Ga0214227_1029331 | Ga0214227_10293312 | F044011 | MLLPSDSSPAPAPRARKWDAEIVQARRHPAWLEFEADISISAALRARVARALDRFGLGTSDIAVDEALDYLTHKELGQSARYFNQAGKAQFNQQQITHAVLSFMAGKEQQRHL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |