Sample 3300020700

Overview

Basic Information
IMG/M Taxon OID	3300020700 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063444 \| Gp0054262 \| Ga0214225
Sample Name	Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 hypolimnion
Sequencing Status	Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Dataset Contents
Total Genome Size	75507841
Sequencing Scaffolds	18
Novel Protein Genes	19
Associated Families	19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia meridionalis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	2
Not Available	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → hypolimnion → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Trout Bog, Vilas County, Wisconsin, USA
Coordinates	Lat. (^o)	46.041	Long. (^o)	-89.686	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000324	Metagenome / Metatranscriptome	1299	Y
F008860	Metagenome	326	N
F011648	Metagenome / Metatranscriptome	288	Y
F013732	Metagenome / Metatranscriptome	268	Y
F022249	Metagenome / Metatranscriptome	215	Y
F022834	Metagenome / Metatranscriptome	212	Y
F025431	Metagenome	201	N
F025903	Metagenome	199	Y
F027395	Metagenome	194	N
F028046	Metagenome	193	Y
F051875	Metagenome / Metatranscriptome	143	N
F059597	Metagenome / Metatranscriptome	133	N
F063277	Metagenome	129	N
F085790	Metagenome / Metatranscriptome	111	Y
F094772	Metagenome	105	N
F098526	Metagenome	103	N
F100244	Metagenome	102	N
F100246	Metagenome	102	Y
F100258	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F000324

Metagenome / Metatranscriptome

1299

F008860

Metagenome

326

F011648

Metagenome / Metatranscriptome

288

F013732

Metagenome / Metatranscriptome

268

F022249

Metagenome / Metatranscriptome

215

F022834

Metagenome / Metatranscriptome

212

F025431

Metagenome

201

F025903

Metagenome

199

F027395

Metagenome

194

F028046

Metagenome

193

F051875

Metagenome / Metatranscriptome

143

F059597

Metagenome / Metatranscriptome

133

F063277

Metagenome

129

F085790

Metagenome / Metatranscriptome

111

F094772

Metagenome

105

F098526

Metagenome

103

F100244

Metagenome

102

F100246

Metagenome

102

F100258

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0214225_1000183	All Organisms → cellular organisms → Bacteria	17916	Open in IMG/M
Ga0214225_1000392	All Organisms → cellular organisms → Bacteria	10373	Open in IMG/M
Ga0214225_1000585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia meridionalis	7861	Open in IMG/M
Ga0214225_1000668	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	7049	Open in IMG/M
Ga0214225_1001377	All Organisms → cellular organisms → Bacteria → Proteobacteria	4146	Open in IMG/M
Ga0214225_1001465	All Organisms → Viruses → Predicted Viral	3936	Open in IMG/M
Ga0214225_1005351	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1434	Open in IMG/M
Ga0214225_1006226	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
Ga0214225_1006332	All Organisms → Viruses → Predicted Viral	1273	Open in IMG/M
Ga0214225_1006593	Not Available	1237	Open in IMG/M
Ga0214225_1010633	Not Available	904	Open in IMG/M
Ga0214225_1011204	Not Available	877	Open in IMG/M
Ga0214225_1011264	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
Ga0214225_1017389	Not Available	681	Open in IMG/M
Ga0214225_1020544	Not Available	622	Open in IMG/M
Ga0214225_1022592	Not Available	591	Open in IMG/M
Ga0214225_1024989	Not Available	562	Open in IMG/M
Ga0214225_1026623	Not Available	542	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0214225_1000183

All Organisms → cellular organisms → Bacteria

17916

Open in IMG/M

Ga0214225_1000392

All Organisms → cellular organisms → Bacteria

10373

Open in IMG/M

Ga0214225_1000585

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → Candidatus Frankia meridionalis

7861

Open in IMG/M

Ga0214225_1000668

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

7049

Open in IMG/M

Ga0214225_1001377

All Organisms → cellular organisms → Bacteria → Proteobacteria

4146

Open in IMG/M

Ga0214225_1001465

All Organisms → Viruses → Predicted Viral

3936

Open in IMG/M

Ga0214225_1005351

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

1434

Open in IMG/M

Ga0214225_1006226

All Organisms → cellular organisms → Bacteria

1290

Open in IMG/M

Ga0214225_1006332

All Organisms → Viruses → Predicted Viral

1273

Open in IMG/M

Ga0214225_1006593

Not Available

1237

Open in IMG/M

Ga0214225_1010633

Not Available

904

Open in IMG/M

Ga0214225_1011204

Not Available

877

Open in IMG/M

Ga0214225_1011264

All Organisms → cellular organisms → Bacteria

874

Open in IMG/M

Ga0214225_1017389

Not Available

681

Open in IMG/M

Ga0214225_1020544

Not Available

622

Open in IMG/M

Ga0214225_1022592

Not Available

591

Open in IMG/M

Ga0214225_1024989

Not Available

562

Open in IMG/M

Ga0214225_1026623

Not Available

542

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0214225_1000183	Ga0214225_100018317	F063277	MSIVAPFVYSGGMVEPYVSLNEVKFSPTAAIIDFTNLIEDASQAVQDRALYELIVRASSKADNYTMGVYGSLCATSNTENGRYYMNRNGQIVINPYFTPILAVESFSAGWGPGDGLQNIQLSTSNCSIERTQFIITSQSTMGLYFGNLGIVGGNMQSGTEIFCQWSYINGWANTFTNSTSNAGATSITVNNVMGIFPGQNLTIWDGQKDEYVQVATTWTPGNTTLTFTNPLKYAHGSGVNVSALPASVKQAVIHFIVGMIKERGQGGLVLNEIGEPTAVSARTESSVTDEAMAYDLLDDFKQIWGRA
Ga0214225_1000392	Ga0214225_10003924	F085790	MLMPNPPLNSDRARTVFRSFSSFRFLVFAHRLGAGRAG
Ga0214225_1000585	Ga0214225_10005859	F059597	MIVRVDEAARMFVLEGAEVIKRESKKIFRTGADAKGIDSWHSNAWPVPTRRTGNLMNSIYSDGARKLGPGKWESQTGPHIVYGRRIELGFHGSGRWPYYTTRPFPYMQPGIDNSIPQLDILFNSLVIAAQEA
Ga0214225_1000668	Ga0214225_10006687	F098526	MAYSIFTAAETEAFFNSIPDVGVINRQANPTGHKVVINNITYSILFDHNGAFWTIFEHPNGSLDRQSKILQRIHQSYTTYCCGVWQLGQFYCPFDVPHEIEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHDRILKAFIRNGFVDNSPETFNPNSGNLIKGLVRPCQPPKAKRATRAMLQQRLDTLLGVLHGNT
Ga0214225_1001377	Ga0214225_10013771	F051875	TFKIYYRCINMSSTISTLEEVANQFQVWRDNKKNSKFFPIPPHLKAHARQLLTSYSISQVAAALNISRSFLYNIQKDKISLLDNKNQQTSGTESLNFIPFNFVDPNQQKKNHLINPAPPLKFTCEIIKPNGIKLIIHTSDPTSIINTFLCSN
Ga0214225_1001465	Ga0214225_100146511	F008860	MSAFVKSDTRTPVPGDIIFAHSNGWMAKCIRFAERLRWRKGSYWNHACVISRVDQDGTAYVIQAELKGVSEARLDSVGDYVVLEPPHGVNRNKVLAFTKMQVGSKYGILSILSVIFDIISPDWFPSMRMPNTWICSAVTGEALRYGGWLHDWNDIYCITPSQLFNSLVE
Ga0214225_1005351	Ga0214225_10053512	F011648	MSEQDQDFNNFQQHLERIFKDIEDGVFLSADEIGDLRYACGLPARNTHVNPVLRDVINDFGNVFGLQNFPTIRGKK
Ga0214225_1006226	Ga0214225_10062261	F100244	IEHGHLYEITSNSGPLEARKDHDGIAYGAIGSGAAPALGSLFTDHEDEGSLYQALEASAMHTTNVRSPFLVLSI
Ga0214225_1006332	Ga0214225_10063321	F000324	LTYDGATLNIYHANKGEGLPHHVHTFSHATMCHSGSIIVRKEGKEMIVTKETQPINLTANEWHEIEALEDNTVFCNMFSEGKY
Ga0214225_1006593	Ga0214225_10065932	F027395	MSYNIIENTTIQFYTSQPFTSIGGTVVNPDNVKFSYSIQGQTEVSYTWVNPTGDPTGTIKQGSQGTGYFYANISTVRLPGTWSWQWYGYPSSGADTTHTQVAAQGTVVVSASDL
Ga0214225_1010633	Ga0214225_10106332	F028046	MKLKILLLVAGVAVIGSSVTVLVIQSRPRQLKSSPPENQLPAAISNYSKTFKLNTSPPIWGQSTNGKPTH
Ga0214225_1011204	Ga0214225_10112042	F013732	MPAINLPNGASAILYSNSEISERTNRMITRAFMKAAGSASKLTQAGFVEDDPTTWTVFGEMPDEDIENLNGYQAALIVGMVKSWSLGDAPTMETALDLPKAVFDELSTACGEEFNNRLDTSPTIDPKAPIAD
Ga0214225_1011264	Ga0214225_10112641	F022249	MLKRNGEDCEHPVPNYPGLLTASEFKAYNVAVPLVAEEVRLFNERATTLSEIEKQSAGTAEQVMSQVARDLPSLTINGKPESEWKIRHVLIKSARSEMLLCSRDHEGEQQFGVVEKFDPQSPFARVHGDTDLQMTGNNAFVLLHNYVESERSVLQLFRKDIEATVEEKLSEKFPSQNHS
Ga0214225_1012698	Ga0214225_10126982	F022834	PYAFRDKAKAFLNLATTAAETDKRESEINALKQELAKKDEETAKIKAETDAKLAQMQDQMATILAAVGEKKPRAKKVKEAEEV
Ga0214225_1017389	Ga0214225_10173891	F025431	TDDTSSTYHYYGPSLQVVRDDVDVWTTVKVSPQSGTEQIYENTANESRWGYSTLTKSSTVHTTLNLALSTANFLGNLFKTPLPRVGNVELRSETNNGQNMTALLNTEFGDVVTFKRNSPNSSTTGSYPDQQGLISTNMVVESISHDFQAEPGFWHTSFILDPYPIRS
Ga0214225_1020544	Ga0214225_10205442	F100258	MITIEQITKGIQVEMRKVSQYVDDLAVAGDVAAEADADWEITKAKASLLIAAESIEKLTVSEIANRTLIQCEAEYRAYVIAKNRHDNIKHALRAAQSRLDALRTLMTSLRVAGG
Ga0214225_1022592	Ga0214225_10225922	F025903	MIDITEEPNLISFAGNPVIYEACSDNYLISLGTPAHFELVVSSIDSTVGHSFHLQFAGKTLIFQSAGFTGFDGLLFEVAYIGQTFNDFANNIYQCFLSNYEIQKYFNVTLDPPGTSQRSIKLQAKESGSDGSVVLSNVGVTG
Ga0214225_1024989	Ga0214225_10249891	F100246	VTGVAAGINTPGTDDVYRDYFGILCLIRDTWNNPIGEDIKPSDFIGCARFDISDYIRSKFAAWEMTRFEFPELAGNVRVHGWDYLLKYRVSFAESIAGNVKGLQSTGWNYAIAGGLNHELLTSLNEKYLEYFSIPANKLKFLSWLPLTKYSRSGVMEKLFFLFQDNPSAVHYRLVVIINFTDGSHKV
Ga0214225_1026623	Ga0214225_10266232	F094772	MITPQQVEKRLFDLSKEMDEAHADLVGAEQEFHSASANYEIAMAKSRMKNSHSDLKMTATMREDQALIENEAMHLRLAIAEASVKACRANVNRIRTQVDITRSISSS

Scaffold ID

Protein ID

Family

Sequence

Ga0214225_1000183

Ga0214225_100018317

F063277

MSIVAPFVYSGGMVEPYVSLNEVKFSPTAAIIDFTNLIEDASQAVQDRALYELIVRASSKADNYTMGVYGSLCATSNTENGRYYMNRNGQIVINPYFTPILAVESFSAGWGPGDGLQNIQLSTSNCSIERTQFIITSQSTMGLYFGNLGIVGGNMQSGTEIFCQWSYINGWANTFTNSTSNAGATSITVNNVMGIFPGQNLTIWDGQKDEYVQVATTWTPGNTTLTFTNPLKYAHGSGVNVSALPASVKQAVIHFIVGMIKERGQGGLVLNEIGEPTAVSARTESSVTDEAMAYDLLDDFKQIWGRA

Ga0214225_1000392

Ga0214225_10003924

F085790

MLMPNPPLNSDRARTVFRSFSSFRFLVFAHRLGAGRAG

Ga0214225_1000585

Ga0214225_10005859

F059597

MIVRVDEAARMFVLEGAEVIKRESKKIFRTGADAKGIDSWHSNAWPVPTRRTGNLMNSIYSDGARKLGPGKWESQTGPHIVYGRRIELGFHGSGRWPYYTTRPFPYMQPGIDNSIPQLDILFNSLVIAAQEA

Ga0214225_1000668

Ga0214225_10006687

F098526

MAYSIFTAAETEAFFNSIPDVGVINRQANPTGHKVVINNITYSILFDHNGAFWTIFEHPNGSLDRQSKILQRIHQSYTTYCCGVWQLGQFYCPFDVPHEIEDLMIKMIASCARYKFAKGVMQAYFYRSRSKSSSYQHDRILKAFIRNGFVDNSPETFNPNSGNLIKGLVRPCQPPKAKRATRAMLQQRLDTLLGVLHGNT

Ga0214225_1001377

Ga0214225_10013771

F051875

TFKIYYRCINMSSTISTLEEVANQFQVWRDNKKNSKFFPIPPHLKAHARQLLTSYSISQVAAALNISRSFLYNIQKDKISLLDNKNQQTSGTESLNFIPFNFVDPNQQKKNHLINPAPPLKFTCEIIKPNGIKLIIHTSDPTSIINTFLCSN

Ga0214225_1001465

Ga0214225_100146511

F008860

MSAFVKSDTRTPVPGDIIFAHSNGWMAKCIRFAERLRWRKGSYWNHACVISRVDQDGTAYVIQAELKGVSEARLDSVGDYVVLEPPHGVNRNKVLAFTKMQVGSKYGILSILSVIFDIISPDWFPSMRMPNTWICSAVTGEALRYGGWLHDWNDIYCITPSQLFNSLVE

Ga0214225_1005351

Ga0214225_10053512

F011648

MSEQDQDFNNFQQHLERIFKDIEDGVFLSADEIGDLRYACGLPARNTHVNPVLRDVINDFGNVFGLQNFPTIRGKK

Ga0214225_1006226

Ga0214225_10062261

F100244

IEHGHLYEITSNSGPLEARKDHDGIAYGAIGSGAAPALGSLFTDHEDEGSLYQALEASAMHTTNVRSPFLVLSI

Ga0214225_1006332

Ga0214225_10063321

F000324

LTYDGATLNIYHANKGEGLPHHVHTFSHATMCHSGSIIVRKEGKEMIVTKETQPINLTANEWHEIEALEDNTVFCNMFSEGKY

Ga0214225_1006593

Ga0214225_10065932

F027395

MSYNIIENTTIQFYTSQPFTSIGGTVVNPDNVKFSYSIQGQTEVSYTWVNPTGDPTGTIKQGSQGTGYFYANISTVRLPGTWSWQWYGYPSSGADTTHTQVAAQGTVVVSASDL

Ga0214225_1010633

Ga0214225_10106332

F028046

MKLKILLLVAGVAVIGSSVTVLVIQSRPRQLKSSPPENQLPAAISNYSKTFKLNTSPPIWGQSTNGKPTH

Ga0214225_1011204

Ga0214225_10112042

F013732

MPAINLPNGASAILYSNSEISERTNRMITRAFMKAAGSASKLTQAGFVEDDPTTWTVFGEMPDEDIENLNGYQAALIVGMVKSWSLGDAPTMETALDLPKAVFDELSTACGEEFNNRLDTSPTIDPKAPIAD

Ga0214225_1011264

Ga0214225_10112641

F022249

MLKRNGEDCEHPVPNYPGLLTASEFKAYNVAVPLVAEEVRLFNERATTLSEIEKQSAGTAEQVMSQVARDLPSLTINGKPESEWKIRHVLIKSARSEMLLCSRDHEGEQQFGVVEKFDPQSPFARVHGDTDLQMTGNNAFVLLHNYVESERSVLQLFRKDIEATVEEKLSEKFPSQNHS

Ga0214225_1012698

Ga0214225_10126982

F022834

PYAFRDKAKAFLNLATTAAETDKRESEINALKQELAKKDEETAKIKAETDAKLAQMQDQMATILAAVGEKKPRAKKVKEAEEV

Ga0214225_1017389

Ga0214225_10173891

F025431

TDDTSSTYHYYGPSLQVVRDDVDVWTTVKVSPQSGTEQIYENTANESRWGYSTLTKSSTVHTTLNLALSTANFLGNLFKTPLPRVGNVELRSETNNGQNMTALLNTEFGDVVTFKRNSPNSSTTGSYPDQQGLISTNMVVESISHDFQAEPGFWHTSFILDPYPIRS

Ga0214225_1020544

Ga0214225_10205442

F100258

MITIEQITKGIQVEMRKVSQYVDDLAVAGDVAAEADADWEITKAKASLLIAAESIEKLTVSEIANRTLIQCEAEYRAYVIAKNRHDNIKHALRAAQSRLDALRTLMTSLRVAGG

Ga0214225_1022592

Ga0214225_10225922

F025903

MIDITEEPNLISFAGNPVIYEACSDNYLISLGTPAHFELVVSSIDSTVGHSFHLQFAGKTLIFQSAGFTGFDGLLFEVAYIGQTFNDFANNIYQCFLSNYEIQKYFNVTLDPPGTSQRSIKLQAKESGSDGSVVLSNVGVTG

Ga0214225_1024989

Ga0214225_10249891

F100246

VTGVAAGINTPGTDDVYRDYFGILCLIRDTWNNPIGEDIKPSDFIGCARFDISDYIRSKFAAWEMTRFEFPELAGNVRVHGWDYLLKYRVSFAESIAGNVKGLQSTGWNYAIAGGLNHELLTSLNEKYLEYFSIPANKLKFLSWLPLTKYSRSGVMEKLFFLFQDNPSAVHYRLVVIINFTDGSHKV

Ga0214225_1026623

Ga0214225_10266232

F094772

MITPQQVEKRLFDLSKEMDEAHADLVGAEQEFHSASANYEIAMAKSRMKNSHSDLKMTATMREDQALIENEAMHLRLAIAEASVKACRANVNRIRTQVDITRSISSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300020700: Freshwater microbial communities from Trout Bog Lake, WI - 17SEP2007 hypolimnion

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences